Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosporium_20cladosporioides_20[genbank_20GCA_5F001931875.2_202017 -02-15] 843 sequences; 47,573,060 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq744 214 2e-50 >seq744 Length=38458 Score = 214 bits (236), Expect = 2e-50 Identities = 597/908 (66%), Gaps = 30/908 (3%) Strand=Plus/Plus Query 92742 TTAGAAATCTGCATCTAGTGTAAATACATTGTCAAGTGGATTCTTATTCATAACACCACA 92801 ||||||||| ||||||| ||||| || ||| || | ||| ||||| |||||| Sbjct 30481 TTAGAAATCAGCATCTAAGGTAAAGGTCTTTTCAGCAGGCTGCTTGTTCATGACACCAGC 30540 Query 92802 TTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGA 92861 ||| || || || ||||||||||| || ||||| |||| | ||| ||| Sbjct 30541 ACGTTGATAGTCAGAGACACGCTTTTCAAAGAAGTTGGTCTTGCCTTGAAGAGAGATCAT 30600 Query 92862 ATTCACTA-GTGAT-TGGATTCTTGGCGTTATAATACTTTTCA---CC--GATCAACTCG 92914 | || | || | |||||| | || | ||| ||| ||| || || |||| Sbjct 30601 GTCCATAAAGTCAAATGGATTGGTAGCCATGTAAATCTTGTCAAATCCAAGAGCAAC--- 30657 Query 92915 TACAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCT 92974 || | | |||||| || ||||| ||||| || |||||||| || ||||||| || Sbjct 30658 --CATGAGACGATCAGCAACGAATTCGATGTATTGGCACATCAAAGCAGAATTCATGCCG 30715 Query 92975 AGAAGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTC 93034 | ||| || || ||||| || ||||| || || | || || || ||||| Sbjct 30716 ATGAGAGCAACGGGAAGAGCATCCGTCAAAAATTCCTGTTCAATGCTGACAGCTTCCAAG 30775 Query 93035 AAGATTTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCAC 93094 | ||| || | || | | || | | | ||||| | | ||| || || || Sbjct 30776 ATGATATCCTTGACGCGT-TCTTGGCTAGGACGCTTACGA-AGATGGGTAAATAAAAGAC 30833 Query 93095 --GCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAAC 93152 |||||||| ||||| | ||||| || || | ||||| |||||||||||||| |||| Sbjct 30834 AAGCAAAGTCAGTATGAAGGCCTTCATCACGACAGATCAATTCATTGCTGAATGTCAAAC 30893 Query 93153 CTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTA 93212 | || | || || ||||||||||||||||| || |||||||| |||||| || || | Sbjct 30894 CAGGCATCAAACCACGTTTCTTGAGCCAAAAAATGGAAGCAAAGGAACCAGAGAAGAAAA 30953 Query 93213 TACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGA 93272 ||||||| || || ||||| || |||| ||| || |||||| || ||| | | Sbjct 30954 TACCTTCGACAGCAGCAAAGGCAACAAGACGCTCAGCAAAAGAACCG---TTAGAGGAAA 31010 Query 93273 TCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAA 93332 |||| || || |||||||| || ||| | || |||||||| | || || ||||| || Sbjct 31011 TCCACTTGAAGGCCCAATCAGCCTTTCTTTTGATACAAGGGATAGTGTCAATAGCAGAAA 31070 Query 93333 ATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTT 93392 | || ||| ||| | |||| || || || || || || ||| || ||| Sbjct 31071 AGAGCATTTCTTTCTCTTGGTTATCTTTGATATAAGTGTCAATCAAAAGACTGTAAGTTT 31130 Query 93393 CAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCT 93452 | | || | ||| || || ||||| || || ||||||||| ||||||| | |||| Sbjct 31131 CTGCGTGAATATTTTCAATCATGATTTGAAAGCCATAGAAACATTTAGCTTCAGGAATCT 31190 Query 93453 GCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaa 93512 ||||| | | |||| | | || | |||||||| || || ||||| || | |||| Sbjct 31191 TGACTTCATCACAAAAGTTTTGAACCAAGTTTTCATTAACAATGCCATCTGAACCAGCAA 31250 Query 93513 aaaaaGCCAATATATGCTTTATAAA-------ATGTTTCTCATCATCTTTAAGCTTATCC 93565 | || || || | | ||||| |||| ||||||| || ||| Sbjct 31251 AGAAGGCTAAGACGCGAGAGATAAAGAAGCGTTCGTTTTCGGTCATCTT----GTTTTCC 31306 Query 93566 CAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCT 93625 ||||| || || || | ||||| |||||| | |||||||| || ||||| ||| Sbjct 31307 CAATCATGAAGGTCCTTGCTCAAATCGATTTCTTCAGCTGTCCAAAAGGAAGCTTCAGCT 31366 Query 93626 TTTTTGTA 93633 || || || Sbjct 31367 TTCTTATA 31374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556854932079320