Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosporium_20cladosporioides_20[genbank_20GCA_5F001931875.2_202017 -02-15] 843 sequences; 47,573,060 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq812 127 5e-24 seq744 127 5e-24 seq810 114 3e-20 >seq812 Length=913560 Score = 127 bits (140), Expect = 5e-24 Identities = 145/192 (76%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || || || || |||| | ||||| || ||||| || || || || || ||| Sbjct 528789 TCCTTCTGAATGTTGTAATCGGACAAGGTGCGGCCATCTTCCAACTGCTTACCAGCAAAG 528848 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTT 288401 || |||||||| || ||||| ||||||||||| ||||| || ||| || ||||| Sbjct 528849 ATAAGACGCTGCTGGTCGGGAGGGATGCCTTCTTTATCTTGGATCTT-GCTCTTGACGTT 528907 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || | ||| |||||| ||||| || || || ||||| ||||||||||||||||| Sbjct 528908 ATCGATGGTATCTGACGATTCGACTTCCAGAGTAATAGTCTTGCCGGTCAGAGTCTTGAC 528967 Query 288462 GAATATCTGCAT 288473 ||| |||||||| Sbjct 528968 GAAAATCTGCAT 528979 Score = 125 bits (138), Expect = 2e-23 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || ||||| | || ||||| |||| || || || ||||| || ||||||| | Sbjct 528981 CCTCCACGGAGGCGCAGGACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAG 529040 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || || || | || ||||| |||||||||||||| || || ||| Sbjct 529041 AGTGTGCGGCCATCCTCAAGCTGCTTTCCAGCGAAGATCAGACGTTGCTGGTCGGGAGGG 529100 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 || || || ||||||||||| || ||| || ||||| || || | ||| || || || Sbjct 529101 ATACCCTCCTTATCCTGGATCTT-GCTCTTGACGTTGTCGATGGTGTCGGAAGACTCAAC 529159 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| ||||| || || || ||||| ||||| |||||||| Sbjct 529160 CTCGAGGGTGATAGTCTTTCCAGTAAGGGTCTTCACGAAGATCTGCAT 529207 >seq744 Length=38458 Score = 127 bits (140), Expect = 5e-24 Identities = 175/244 (72%), Gaps = 7/244 (3%) Strand=Plus/Minus Query 269152 ATCGGTATGAATGCCGATCTCATGAATCAATATATCGAATTCGTGGCTGATCGTATCTTC 269211 ||||| |||||| | | | | ||| ||||| ||||||||||| ||||||||| || | Sbjct 30717 ATCGGCATGAATTCTGCTTTGATGTGCCAATACATCGAATTCGTTGCTGATCGTCTCATG 30658 Query 269212 ACGGCACTCGGTTATGAGAAAGTGTACAATTCGAAGAATCCCTTCGCCTTTATGGAACTA 269271 || || || | ||| || | |||| | | ||||| || | ||||||||| | Sbjct 30657 GTTGCTCTTGGATTTGACAAGATTTACATGGCTACCAATCCATTTGACTTTATGGACATG 30598 Query 269272 ATTTCGCTCGAAGGAAAGACGAACTTCTTCGAAAAGCGTGTCAGCGACTATCAACGTCCT 269331 || || || |||| ||||| |||||||| |||||||||||| |||||||||||| || Sbjct 30597 ATCTCTCTTCAAGGCAAGACCAACTTCTTTGAAAAGCGTGTCTCTGACTATCAACGTGCT 30538 Query 269332 GGTGTAATGA------ATCCAGAAGACAATATTTTTGCCATCGATGATGATTTTTAAGA- 269384 ||||| |||| | || | || || | ||| || | |||| |||||| ||||| Sbjct 30537 GGTGTCATGAACAAGCAGCCTGCTGAAAAGACCTTTACCTTAGATGCTGATTTCTAAGAT 30478 Query 269385 CTTT 269388 |||| Sbjct 30477 CTTT 30474 >seq810 Length=1034423 Score = 114 bits (126), Expect = 3e-20 Identities = 142/193 (74%), Gaps = 6/193 (3%) Strand=Plus/Minus Query 288275 TCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTC 288334 |||| | | | || ||||| || |||||| || ||||| || ||||| | || |||| Sbjct 583020 TCGTCCATACCTTCTGGATGTTGTAGTCGCTCAGAGTGCGGCCATCTTCGAGCTGCTTTC 582961 Query 288335 CTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCG 288391 | ||||||||||||||||| || || ||| || || || || |||||||| || | Sbjct 582960 CGGCGAAGATCAGACGCTGCTGG---TCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGG 582904 Query 288392 CTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCA 288451 | || ||||| || || | ||| ||| || || ||||| || || ||||| || |||| Sbjct 582903 CCTTGACGTTGTCGATCGTGTCGGACGACTCGACATCGAGGGTAATGGTCTTACCCGTCA 582844 Query 288452 GAGTCTTGACGAA 288464 | ||||||||||| Sbjct 582843 GGGTCTTGACGAA 582831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179641658626554