Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cladosporium_20cladosporioides_20[genbank_20GCA_5F001931875.2_202017
-02-15] 843 sequences; 47,573,060 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq744 286 4e-72
seq723 122 1e-22
>seq744
Length=38458
Score = 286 bits (316), Expect = 4e-72
Identities = 570/836 (68%), Gaps = 10/836 (1%)
Strand=Plus/Plus
Query 18672 TTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT-T 18730
|||||| || | || | ||||||||||| || || || || | | || || ||| |
Sbjct 30544 TTGATAGTCAGAGACACGCTTTTCAAAGAAGTTGGTCTTGCCTTGAAGAGAGAT-CATGT 30602
Query 18731 CCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGTA 18790
||||||| ||||||||||| | | | || || || | ||||| | | | | |
Sbjct 30603 CCATAAAGTCAAATGGATTGGTAGCCATGTAAATCTTGTCAAATCCAAGAGCAACCATGA 30662
Query 18791 GTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAATT 18850
| | ||| || || |||| || ||| | ||||| | || ||||||| || || |
Sbjct 30663 GACGATCAGCAACGAATTCGATGTATTGGCACATCAAAGCAGAATTCATGCCGATGAGAG 30722
Query 18851 TAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAATAG 18910
||| || || ||||| || | |||||| ||||| || | || || || | || |||
Sbjct 30723 CAACGGGAAGAGCATCCGTCAAAAATTCCTGTTCAATGCTGACAGCTTCCAAGATGATAT 30782
Query 18911 ATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAAAAT 18970
|| | |||| ||||| | | ||||||| |||| | | ||| ||||| |
Sbjct 30783 CCTTGACGCGTTCTTGGCTAGGACGCTTACGAAGATGGGTAAATAAAAGACAAGCAAAGT 30842
Query 18971 CACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCA 19030
|| ||| || || || || | || ||||||||||| ||||| |||||||||||||
Sbjct 30843 CAGTATGAAGGCCTTCATCACGACAGATCAATTCATTGCTGAATGTCAAACCAGGCATCA 30902
Query 19031 GTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTA 19090
|| | ||| || | ||| || || |||||||| || ||||| ||||| |||||||| |
Sbjct 30903 AACCACGTTTCTTGAGCCAAAAAATGGAAGCAAAGGAACCAGAGAAGAAAATACCTTCGA 30962
Query 19091 CTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTTCA 19150
| || ||||| ||||| || | || || | || | | ||| |||||| || |
Sbjct 30963 CAGCAGCAAAGGCAACAAGACGCTCAGCAAA---AGAACCGTTAGAGGAAATCCACTTGA 31019
Query 19151 GTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAG-ATAC 19209
|||||||||||||| |||| | ||| || || || || |||| | ||| || ||
Sbjct 31020 AGGCCCAATCAGCCTTTCTTTTGATACAAGGGATAGTGTCAATAGCAGAAAAGAGCATTT 31079
Query 19210 ATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGA 19269
| ||| | ||||||| | ||| | || ||||| | |||||| |||||| |||
Sbjct 31080 CT-TTCTCTTGGTTATCTTTGATATAAGTGTCAATCAAAAGACTGTAAGTTTCTGCGTGA 31138
Query 19270 ATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCA 19329
|||||||| || || ||||| || || |||||| | ||||| | |||| ||||||
Sbjct 31139 ATATTTTCAATCATGATTTGAAAGCCATAGAAACATTTAGCTTCAGGAATCTTGACTTCA 31198
Query 19330 CTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCT 19389
|||||| ||| ||||| ||||||||||| || ||||| | | ||||| || |||
Sbjct 31199 TCACAAAAGTTTTGAACCAAGTTTTCATTAACAATGCCATCTGAACCAGCAAAGAAGGCT 31258
Query 19390 AATACATGTTTAATAAAATGTTTTTCATCTGAGGT--TAATGTATT-CCAATCATTAATA 19446
|| || | ||||| ||| | | ||| | ||| || |||||||| ||
Sbjct 31259 AAGACGCGAGAGATAAAGAAGCGTTCGTTTTCGGTCATCTTGTTTTCCCAATCATGAAGG 31318
Query 19447 TCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATA 19502
|| || ||||| | ||||||| |||||||||| ||||| || ||||| |||||
Sbjct 31319 TCCTTGCTCAAATCGATTTCTTCAGCTGTCCAAAAGGAAGCTTCAGCTTTCTTATA 31374
>seq723
Length=18298
Score = 122 bits (134), Expect = 1e-22
Identities = 428/669 (64%), Gaps = 5/669 (1%)
Strand=Plus/Plus
Query 47019 AAATAATACATACCAGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAAT 47078
||||| ||||| ||||||||||| || |||| |||| || |||||| || |||
Sbjct 4428 AAATAGTACATGCCAGTCTTTAATCCCTTCTTCCAGGCATAAAAGTGCATAGAGGTCAAT 4487
Query 47079 TTAGAATAACTAGGTTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCA 47138
|| | | | ||||| | | || | ||| | ||||||| || || ||||| ||
Sbjct 4488 TTGCCAAAGTTTGGTTCGGCAGTAAACAAATTCATAGATTGAGATTGGTCGATAAAAGCT 4547
Query 47139 CCTCTATCAGCTGCCATATCTAAAATAACCCTTTGTGGTATCTCCCATACTGTTTTATAA 47198
||||||||||| ||||| || | |||| ||||||| ||||||||||||||||| ||
Sbjct 4548 CCTCTATCAGCGGCCATGTCAATAATAGTTCTTTGTGAAATCTCCCATACTGTTTTGTAT 4607
Query 47199 ATTTGTTTAATGTCTTCTGG---GAGATTAGTATTTTGAATAGATCCTCCgttttctata 47255
| | ||| | || || || | | || ||| ||| || || | | ||
Sbjct 4608 AGCTTTTTGAGATCATCAGGAACGCCGGGAATACGTTGGATACTACCGCCATGAGCAATC 4667
Query 47256 attttgttttttaattcatttgaccaaagttttcgttcagttaatgtttttaaAAGATGA 47315
|| |||| || | | || ||| | | | ||| | | || || | |||
Sbjct 4668 ATCATGTTCTTGATGTTATCATTCCATAAATCGAGCTCAATGAGGTCATTCAATAAATGC 4727
Query 47316 GGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATAT 47375
| || || ||||| ||||| ||| | | || | ||| |||| ||||| || || ||
Sbjct 4728 TGGTTGACTATTTGGAATTCACCACTTTGAACACGACGCGTATAAATATTGCTAGTGTAA 4787
Query 47376 GGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCA 47435
|| || | |||| ||||| || || |||||| ||| || |||||||| | |||
Sbjct 4788 GGCTCGAAGCATTCGTTATTGCCCAATATTTGACTAGTGCTAGCAGTAGGCATAGGAGCA 4847
Query 47436 ACTAATAAGCTA-TTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATC 47494
|| || ||| | || | || |||||||| | || | ||||||||
Sbjct 4848 AC-AAGAAGAGAGTTACGGACACCATATTTCTTGATATTGGCTCTCAAAGTATTCCAATC 4906
Query 47495 CCAAAGATCTGATGGAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGG 47554
| | || || |||||||| ||||| | ||||||||| |||| ||||| ||
Sbjct 4907 GAGATGTTCCGAGCCTTTGACATTCCATAAATCGTGTTGAAGAATACCTTGACTTACAGG 4966
Query 47555 AGAACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAA 47614
|| || | || || | ||| || || | | ||| || || ||||| || || ||
Sbjct 4967 TGAGCCTTCGTAGGTCTCATAGGGTCCCTGTTCTTTCGCAAGCTCACACGAAGCCTCTAA 5026
Query 47615 TGCACTATAATATATTGTTTCAAATATTTTTATGTTTAGATTCCTTGCTTCTGATGATTC 47674
||| | |||| ||| |||| || || | | |||| | | ||||| | || ||
Sbjct 5027 AGCAGCAAAATAAATTCTTTCGAAAATATCTCTGTTCAATTGAGCAGCTTCAGGAGAATC 5086
Query 47675 AAAAGGATA 47683
||| |||||
Sbjct 5087 AAACGGATA 5095
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562102876778520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |