Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosporium_20cladosporioides_20[genbank_20GCA_5F001931875.2_202017 -02-15] 843 sequences; 47,573,060 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq744 286 4e-72 seq723 122 1e-22 >seq744 Length=38458 Score = 286 bits (316), Expect = 4e-72 Identities = 570/836 (68%), Gaps = 10/836 (1%) Strand=Plus/Plus Query 18672 TTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT-T 18730 |||||| || | || | ||||||||||| || || || || | | || || ||| | Sbjct 30544 TTGATAGTCAGAGACACGCTTTTCAAAGAAGTTGGTCTTGCCTTGAAGAGAGAT-CATGT 30602 Query 18731 CCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGTA 18790 ||||||| ||||||||||| | | | || || || | ||||| | | | | | Sbjct 30603 CCATAAAGTCAAATGGATTGGTAGCCATGTAAATCTTGTCAAATCCAAGAGCAACCATGA 30662 Query 18791 GTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAATT 18850 | | ||| || || |||| || ||| | ||||| | || ||||||| || || | Sbjct 30663 GACGATCAGCAACGAATTCGATGTATTGGCACATCAAAGCAGAATTCATGCCGATGAGAG 30722 Query 18851 TAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAATAG 18910 ||| || || ||||| || | |||||| ||||| || | || || || | || ||| Sbjct 30723 CAACGGGAAGAGCATCCGTCAAAAATTCCTGTTCAATGCTGACAGCTTCCAAGATGATAT 30782 Query 18911 ATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAAAAT 18970 || | |||| ||||| | | ||||||| |||| | | ||| ||||| | Sbjct 30783 CCTTGACGCGTTCTTGGCTAGGACGCTTACGAAGATGGGTAAATAAAAGACAAGCAAAGT 30842 Query 18971 CACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCA 19030 || ||| || || || || | || ||||||||||| ||||| ||||||||||||| Sbjct 30843 CAGTATGAAGGCCTTCATCACGACAGATCAATTCATTGCTGAATGTCAAACCAGGCATCA 30902 Query 19031 GTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTA 19090 || | ||| || | ||| || || |||||||| || ||||| ||||| |||||||| | Sbjct 30903 AACCACGTTTCTTGAGCCAAAAAATGGAAGCAAAGGAACCAGAGAAGAAAATACCTTCGA 30962 Query 19091 CTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTTCA 19150 | || ||||| ||||| || | || || | || | | ||| |||||| || | Sbjct 30963 CAGCAGCAAAGGCAACAAGACGCTCAGCAAA---AGAACCGTTAGAGGAAATCCACTTGA 31019 Query 19151 GTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAG-ATAC 19209 |||||||||||||| |||| | ||| || || || || |||| | ||| || || Sbjct 31020 AGGCCCAATCAGCCTTTCTTTTGATACAAGGGATAGTGTCAATAGCAGAAAAGAGCATTT 31079 Query 19210 ATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGA 19269 | ||| | ||||||| | ||| | || ||||| | |||||| |||||| ||| Sbjct 31080 CT-TTCTCTTGGTTATCTTTGATATAAGTGTCAATCAAAAGACTGTAAGTTTCTGCGTGA 31138 Query 19270 ATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCA 19329 |||||||| || || ||||| || || |||||| | ||||| | |||| |||||| Sbjct 31139 ATATTTTCAATCATGATTTGAAAGCCATAGAAACATTTAGCTTCAGGAATCTTGACTTCA 31198 Query 19330 CTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCT 19389 |||||| ||| ||||| ||||||||||| || ||||| | | ||||| || ||| Sbjct 31199 TCACAAAAGTTTTGAACCAAGTTTTCATTAACAATGCCATCTGAACCAGCAAAGAAGGCT 31258 Query 19390 AATACATGTTTAATAAAATGTTTTTCATCTGAGGT--TAATGTATT-CCAATCATTAATA 19446 || || | ||||| ||| | | ||| | ||| || |||||||| || Sbjct 31259 AAGACGCGAGAGATAAAGAAGCGTTCGTTTTCGGTCATCTTGTTTTCCCAATCATGAAGG 31318 Query 19447 TCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATA 19502 || || ||||| | ||||||| |||||||||| ||||| || ||||| ||||| Sbjct 31319 TCCTTGCTCAAATCGATTTCTTCAGCTGTCCAAAAGGAAGCTTCAGCTTTCTTATA 31374 >seq723 Length=18298 Score = 122 bits (134), Expect = 1e-22 Identities = 428/669 (64%), Gaps = 5/669 (1%) Strand=Plus/Plus Query 47019 AAATAATACATACCAGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAAT 47078 ||||| ||||| ||||||||||| || |||| |||| || |||||| || ||| Sbjct 4428 AAATAGTACATGCCAGTCTTTAATCCCTTCTTCCAGGCATAAAAGTGCATAGAGGTCAAT 4487 Query 47079 TTAGAATAACTAGGTTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCA 47138 || | | | ||||| | | || | ||| | ||||||| || || ||||| || Sbjct 4488 TTGCCAAAGTTTGGTTCGGCAGTAAACAAATTCATAGATTGAGATTGGTCGATAAAAGCT 4547 Query 47139 CCTCTATCAGCTGCCATATCTAAAATAACCCTTTGTGGTATCTCCCATACTGTTTTATAA 47198 ||||||||||| ||||| || | |||| ||||||| ||||||||||||||||| || Sbjct 4548 CCTCTATCAGCGGCCATGTCAATAATAGTTCTTTGTGAAATCTCCCATACTGTTTTGTAT 4607 Query 47199 ATTTGTTTAATGTCTTCTGG---GAGATTAGTATTTTGAATAGATCCTCCgttttctata 47255 | | ||| | || || || | | || ||| ||| || || | | || Sbjct 4608 AGCTTTTTGAGATCATCAGGAACGCCGGGAATACGTTGGATACTACCGCCATGAGCAATC 4667 Query 47256 attttgttttttaattcatttgaccaaagttttcgttcagttaatgtttttaaAAGATGA 47315 || |||| || | | || ||| | | | ||| | | || || | ||| Sbjct 4668 ATCATGTTCTTGATGTTATCATTCCATAAATCGAGCTCAATGAGGTCATTCAATAAATGC 4727 Query 47316 GGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATAT 47375 | || || ||||| ||||| ||| | | || | ||| |||| ||||| || || || Sbjct 4728 TGGTTGACTATTTGGAATTCACCACTTTGAACACGACGCGTATAAATATTGCTAGTGTAA 4787 Query 47376 GGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCA 47435 || || | |||| ||||| || || |||||| ||| || |||||||| | ||| Sbjct 4788 GGCTCGAAGCATTCGTTATTGCCCAATATTTGACTAGTGCTAGCAGTAGGCATAGGAGCA 4847 Query 47436 ACTAATAAGCTA-TTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATC 47494 || || ||| | || | || |||||||| | || | |||||||| Sbjct 4848 AC-AAGAAGAGAGTTACGGACACCATATTTCTTGATATTGGCTCTCAAAGTATTCCAATC 4906 Query 47495 CCAAAGATCTGATGGAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGG 47554 | | || || |||||||| ||||| | ||||||||| |||| ||||| || Sbjct 4907 GAGATGTTCCGAGCCTTTGACATTCCATAAATCGTGTTGAAGAATACCTTGACTTACAGG 4966 Query 47555 AGAACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAA 47614 || || | || || | ||| || || | | ||| || || ||||| || || || Sbjct 4967 TGAGCCTTCGTAGGTCTCATAGGGTCCCTGTTCTTTCGCAAGCTCACACGAAGCCTCTAA 5026 Query 47615 TGCACTATAATATATTGTTTCAAATATTTTTATGTTTAGATTCCTTGCTTCTGATGATTC 47674 ||| | |||| ||| |||| || || | | |||| | | ||||| | || || Sbjct 5027 AGCAGCAAAATAAATTCTTTCGAAAATATCTCTGTTCAATTGAGCAGCTTCAGGAGAATC 5086 Query 47675 AAAAGGATA 47683 ||| ||||| Sbjct 5087 AAACGGATA 5095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562102876778520