Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosporium_20cladosporioides_20[genbank_20GCA_5F001931875.2_202017 -02-15] 843 sequences; 47,573,060 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq578 102 4e-17 seq723 96.9 2e-15 >seq578 Length=440600 Score = 102 bits (112), Expect = 4e-17 Identities = 189/273 (69%), Gaps = 6/273 (2%) Strand=Plus/Minus Query 25888 ATTTGGACAGAATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGG 25947 |||||| ||||||| ||| ||| | || |||||| || ||| || | ||| || Sbjct 115960 ATTTGGGCAGAATAGGGTCCAGTCACCGTTAGACTCAACACGCTTCATGAAGAGATCGGG 115901 Query 25948 AATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTT 26007 | |||| | ||||| || | || | ||||| | ||||| || ||||| ||||| Sbjct 115900 AGTCCAGAGGGCATAGAAGAGGTCACGTGCTCTGACCTCTTCCTTACCGTGGTTCTTGCG 115841 Query 26008 TAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACC 26067 || || ||||| ||||| || || |||||||| || || | |||||||| ||| ||| Sbjct 115840 AAGGTCCAAGAACTCAAAGATGTCGGAGTGCCAGGGCTCCAGGTAGATAGCGAAAGCACC 115781 Query 26068 TTTTC--TTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAAC 26125 | || |||| | || || || |||||||||||||| | ||||| ||| | | Sbjct 115780 AGGGCGCTTGTTCC--CGCCCTGGTCAACGTATCTTGCAGTGTTGTTGAACACTCGAAGC 115723 Query 26126 ATTGGAACTAATCCAGTT-GAAAATCCGTTTGT 26157 || || || || || ||| ||| |||||| || Sbjct 115722 ATAGGGAC-AAGCCCGTTGGAAGTTCCGTTAGT 115691 >seq723 Length=18298 Score = 96.9 bits (106), Expect = 2e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 24683 ACTGCTGGTTTAGTTCTAAGATAATACATTCCAGTTTTCAATTTCTTCTTCCAACCGTAA 24742 ||||| ||| ||| ||| | ||| ||||| ||||| || ||| ||||||||| | ||| Sbjct 4410 ACTGCAGGTCTAGATCTCAAATAGTACATGCCAGTCTTTAATCCCTTCTTCCAGGCATAA 4469 Query 24743 AAATGCATTGATGTTAGTTTTGCAATGTTTGCTGATTCTAAAAACAAGTTCATCGATTGA 24802 || ||||| || || | ||| ||| ||||| | | |||||| ||||| |||||| Sbjct 4470 AAGTGCATAGAGGTCAATTTGCCAAAGTTTGGTTCGGCAGTAAACAAATTCATAGATTGA 4529 Query 24803 GCTTGGCAAACAAAACGTTGTCTATCTGCAGCTAAGTCAATGATCGTTTTCATCGATATA 24862 | |||| | |||| | |||||| || || | |||||| || ||| | || || Sbjct 4530 GATTGGTCGATAAAAGCTCCTCTATCAGCGGCCATGTCAATAATAGTTCTTTGTGAAATC 4589 Query 24863 TCGTAAGCTGTTTTGTATCTCTCTTT 24888 || | ||||||||||| || ||| Sbjct 4590 TCCCATACTGTTTTGTATAGCTTTTT 4615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253037400251225