Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosporium_20cladosporioides_20[genbank_20GCA_5F001931875.2_202017 -02-15] 843 sequences; 47,573,060 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq578 127 6e-24 seq723 122 3e-22 seq819 104 7e-17 seq657 93.3 1e-13 seq214 86.0 2e-11 seq837 84.2 6e-11 seq625 84.2 6e-11 >seq578 Length=440600 Score = 127 bits (140), Expect = 6e-24 Identities = 407/626 (65%), Gaps = 9/626 (1%) Strand=Plus/Minus Query 155910 ACACGCTCCATAAATACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGAC 155969 ||||||| ||| || | ||| | ||| | |||||||| ||||| | ||| | |||| Sbjct 115923 ACACGCTTCATGAAGAGATCGGGAGTCCAGAGGGCATAGAAGAGGTCACGTGC-TCTGAC 115865 Query 155970 -TCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGG 156028 || || | ||||| ||||| || || || ||||| || || || | || || Sbjct 115864 CTCTTCCTTACCGTGGTTCTTGCGAAGGTCCAAGAACTCAAAGATGTCGGAGTGCCAGGG 115805 Query 156029 CTCCAGATACATAGCAAAACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGC 156085 |||||| || ||||| ||| |||| | |||| || ||||| || || || | || Sbjct 115804 CTCCAGGTAGATAGCGAAAGCACCAGGGCGCTTGTTCCCGCCCTGGTCAACGTATCTTGC 115745 Query 156086 AGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCG 156145 ||| || ||||| || | |||||||| | || || |||||||| || || || || | Sbjct 115744 AGTGTTGTTGAACACTCGAAGCATAGGGACAAGCCCGTTGGAAGTTCCGTTAGTACCACC 115685 Query 156146 AATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTT 156205 || | ||||| | | || | | || | | || ||||||||||| | || Sbjct 115684 GATGTAAGAACCTGTAGCACGGATACGGTGGACGTTGAGACCAATACCACCCGCAGTCTT 115625 Query 156206 AGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT 156265 || || || || ||| | || | | ||||| ||||| || || | ||| Sbjct 115624 GGAGATCATGGCACAAGTCTTCAAGGTGTCATAGATACCCTCAATGCTGTCCTCCTTCAT 115565 Query 156266 T--GATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTA 156323 |||| || |||| || | || || | || || || |||||||| || || Sbjct 115564 ATCGATA--AGGAAGCAGGAGGCCAGCTGCGGCTGAGGAGTACCGGCGTTGAACAGAGTC 115507 Query 156324 GGTGTTGCATGAATAAAATACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCA 156383 || | || ||| | || || || | ||||| || ||| ||||| ||| |||||| Sbjct 115506 GGCGAGGCGTGAGTGAAGTATTTCTGGGACATCAGATTGTAGGTCTCGATAACCTTCTCG 115447 Query 156384 AGATTAGACCCGTGAATACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACA 156443 || | | ||||| || | || | || | ||| ||| |||||||||||||| || Sbjct 115446 AGGTCATCACCGTGGATTCCGACCGCAACACGCATAATCATGTGCTGAGGACGCTCAGCA 115387 Query 156444 ATCACTCCATCAATTCGCAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATAATCA 156503 | | ||||| || || || || || | ||||||||||| || || ||||| || | Sbjct 115386 ACCTTTCCATTGATGCGGAGCAGATACGATCGTTCCAGAGTCTTGAATCCGAAGTATTGG 115327 Query 156504 AACAGAAAATCACGGTTGTAATCAAT 156529 | |||||||||| ||| |||| Sbjct 115326 TAGTTGAAATCACGGTCATAAACAAT 115301 >seq723 Length=18298 Score = 122 bits (134), Expect = 3e-22 Identities = 313/466 (67%), Gaps = 17/466 (4%) Strand=Plus/Plus Query 155912 ACGCTCCATAAATACATCACTCGCCCA-AATAGCATAGAAAAGGTCCCTTGC---CTTTG 155967 ||||||||| || | |||| | |||| ||| || |||| | ||| | ||| | || Sbjct 5834 ACGCTCCATGAAAAGATCAGGCACCCATAATCCCA-AGAACAAGTCGCGTGCGCGCATT- 5891 Query 155968 ACTCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAATA--TCAGGATGGTG 156025 |||||| | || | ||||| || | || |||||||| |||| || ||| Sbjct 5892 --TCCTCAGCACCATTGTTCTTGCGCAAGTCCAAGAATTCG--AATACGTCGACATGCCA 5947 Query 156026 TGGCTCCAGATACATAGCAAAACTACCATTCCTCTTGCCACC--CTGATCT-ACATACCG 156082 || || | ||| | |||||| |||| || | || ||||| || | | ||| | || Sbjct 5948 AGGTTCTATATAGACAGCAAAGTTACCGTTGCGTTTACCACCTCCTTGTGTCACAAAGCG 6007 Query 156083 AGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCC 156142 |||||| | ||| ||||| | ||||| |||||||| |||||||| || || || ||||| Sbjct 6008 AGCAGTGTCATTAAAGACTCTGAGCATTGGAATAATGCCATTGGAGGTACCGTTTGTTCC 6067 Query 156143 -GCGAATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACC 156201 |||| ||| || ||||| |||| || ||| | | |||| ||| || | Sbjct 6068 TGCGA-TATAAGAGCCAGAGCCACGAATCTTTTGAGCAGCAACGCCAACACCGCCAGCAG 6126 Query 156202 ATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTT 156261 | || || || |||| || | | ||||| | | || ||||| ||| || |||| Sbjct 6127 ACTTGGAGATACGAGCACACGTGGTGATAGTATCGTAGATGCCTTCGATACTGTCCTCTT 6186 Query 156262 CCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTG 156321 |||| | || |||| | ||||||||| ||||| ||||||||||| | || Sbjct 6187 TCATTTGAACAAGGAAGCAACTAGACAATTGAGGTTTAGGTGTACCAGCGTTGAACAATG 6246 Query 156322 TAGGTGTTGCATGAATAAAATACTTATTAGACATATAATCGTATGT 156367 ||||||| |||||| |||| || ||| |||||| ||| || || Sbjct 6247 TAGGTGTAGCATGAGTAAAGTATTTAGATGACATAAGATCATAGGT 6292 >seq819 Length=368885 Score = 104 bits (114), Expect = 7e-17 Identities = 159/223 (71%), Gaps = 4/223 (2%) Strand=Plus/Plus Query 302596 CGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCA 302655 ||||| ||||||||||| | ||| || || || |||||||| ||||| ||||||| Sbjct 227850 CGCTGGATATAACCAGTCTCGGCTGTCTTCACGGCAGTATCAATGAGACCCTCACGACCG 227909 Query 302656 CCCATAGCATGGAAGAATAGCTC--TTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAA 302713 |||| || |||||||| | || || ||| |||| | | ||| || |||||| Sbjct 227910 GCCATTGCGTGGAAGAAGAATTCCGTTGGAGTCA-AGCCACGGAGGTAAG-AGTTCTCAA 227967 Query 302714 CGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCT 302773 |||||||||| | ||| || || | |||| ||||| || || || || || | || || Sbjct 227968 CGAAACCACGGGACTCTGGAGAGTAGTCGTCTTTGGTGAAATGAGGAAGTGTACGGTACT 228027 Query 302774 CATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCC 302816 | ||| | || ||||||||||| || ||| |||||| || Sbjct 228028 TGAAACCGAAGGGAATACGCTTTCCTTCGACGGACTGCTGCCC 228070 >seq657 Length=446211 Score = 93.3 bits (102), Expect = 1e-13 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 133451 AAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGAGTTTTGCTACTCGT 133510 ||||| | |||||||| ||| ||||||||||||||| | | ||| || || Sbjct 212280 AAGAAGGCCGACTGGGCCATTCGCTGGATCCAGGACAAGGAGTCCACTTTCGCCCAGCGC 212221 Query 133511 CTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGTTCTGCTCTATTTTT 133570 | ||||| || |||| || ||||| || || ||| ||| | ||| |||||| || Sbjct 212220 TTGGTTGCCTTCGCTGCTGTTGAGGGTATCTTCTTCTCTGGCTCTTTCGCCTCTATCTTC 212161 Query 133571 TGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACGAACTTATTTCAAGG 133630 ||||| || |||||||| | | ||||| ||| || |||||||| || || || | Sbjct 212160 TGGCTGAAGAAGCGTGGCCTCATGCCTGGTCTGACCTTCTCTAACGAGCTGATCTCTCGT 212101 Query 133631 GACGAGGCACTTCACACCGAATTTGC 133656 || |||| || |||||||| || || Sbjct 212100 GATGAGGGTCTGCACACCGACTTCGC 212075 >seq214 Length=22576 Score = 86.0 bits (94), Expect = 2e-11 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 289027 TTACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATT 289086 ||||||| ||||||||||| || | || || | ||| |||| |||| | || || Sbjct 15090 TTACCAATCGCATCAATTTCATCCACAAAGATGATACAAGGAGCGTTTTTCTTGGCTGTT 15031 Query 289087 GCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAA 289146 |||||||| || | || ||||| | || | || ||| |||| || ||||| ||||| Sbjct 15030 GCAAATAAATCACGGACTCGGGAAGAGCCCACGCCGACAAACATCTCAACAAACTCAGAG 14971 Query 289147 GCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTC 289206 | || || | || | ||| |||||| |||||| |||| | || | ||| ||| Sbjct 14970 CCAGACACGCTATAAAAGGGAACACCTGCTTCTCCTGCTGTTGCCTTTGCTAAAAGCGTC 14911 Query 289207 TTACCTGTTCCAGGTGGTCC 289226 ||||| || ||||| || || Sbjct 14910 TTACCCGTACCAGGAGGACC 14891 >seq837 Length=415093 Score = 84.2 bits (92), Expect = 6e-11 Identities = 123/173 (71%), Gaps = 1/173 (1%) Strand=Plus/Plus Query 251497 ATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGAGCCCTACCCTCG 251556 |||| ||| ||||||||||| || |||| ||| |||||||| ||||| | | ||| ||| Sbjct 177219 ATCAGACAGTCACGCTCCATCTCTCCGAGACGGAGACCACCGTCGCGGGATCGACCTTCG 177278 Query 251557 GCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATGTTGCTTATCATTT 251616 | || || || ||||| || | ||||||| || ||| || ||| || | Sbjct 177279 GTGGGTTGGCGGGTGAGGGTAGCGCGAGGACCGCGGGCACGGGAGTGCATCTTGTCTTGA 177338 Query 251617 ACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGATGCTCGAAGG 251669 ||||| ||||| || ||||||| | ||||||| |||||| | | ||||| Sbjct 177339 ACCATGTGCTTCAGTTTCTGGTAGTAGATGGGACCGGTGAAGACG-TAGAAGG 177390 >seq625 Length=387040 Score = 84.2 bits (92), Expect = 6e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 251485 GCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGA 251544 |||||||| | |||||||||||| || |||||||| |||||||| ||||||||||| || Sbjct 271115 GCACCGTGAGCAATCATACAATCGCGTTCCATTTCTCCGAAACGGAGACCACCATCACGT 271174 Query 251545 GCCCTACCCTCGGCAGGCTGACGAGTGAG 251573 || | ||| || | ||||| || || || Sbjct 271175 GCACGACCTTCTACCGGCTGCCGGGTCAG 271203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471801702990091