Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosporium_20cladosporioides_20[genbank_20GCA_5F001931875.2_202017 -02-15] 843 sequences; 47,573,060 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq657 152 6e-31 seq820 129 7e-24 seq578 114 2e-19 seq728 98.7 1e-14 seq723 89.7 6e-12 >seq657 Length=446211 Score = 152 bits (168), Expect = 6e-31 Identities = 226/319 (71%), Gaps = 1/319 (0%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| || || || ||| |||||| |||||||||||||| |||||||||| Sbjct 211778 GCCTTCTGGTAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCAGCGAGCGAGATG 211837 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 ||||| | ||| ||||| | | ||||||| ||| | | || || || | Sbjct 211838 TTGTCCATGAAGTCGAAGGGGTTTGTGGCGTTGTAGTACTTCTTGTTGCCAAGAGAGACC 211897 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 |||||||||||||| || ||||||||||||||||||||||| || |||||| || | | Sbjct 211898 AGCAGGCGGTCGGCAACGAACTCGATGTACTGGCACATGAGCTTGGAGTTCATACCAAGG 211957 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 || || || || || | || ||| ||||| | ||| || |||||||| || |||||| Sbjct 211958 AGGGCAACGGGGAGGGCGTCCGTCAGGAACTCCTGCTCAATGTCGACGGCATCAACGATG 212017 Query 868931 ATCTGCCTGGGCACGTCGGCCGAGGGCTTGTTGACGAGCATCGTGTAGAGCAGGCAGGCA 868990 |||| | | || || | ||||| |||| || | | | ||||| || || Sbjct 212018 ATCTTCTCGACAACCTCAGGTGAGGGGCGGTTGTTCAGGTGGGAGAACAGCAGACAAGCG 212077 Query 868991 AAGTCGCAGTGCA-ACCCT 869008 |||||| ||||| ||||| Sbjct 212078 AAGTCGGTGTGCAGACCCT 212096 Score = 118 bits (130), Expect = 1e-20 Identities = 178/251 (71%), Gaps = 3/251 (1%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 |||||||||||||| || ||||||||| ||||| ||| | |||| | || ||| Sbjct 212434 GAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCAACGAGCCTCAGGGACCTGG 212493 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 ||||| |||| || || | ||||||||| ||||||||||| |||||||| Sbjct 212494 ACCTCGCCACTGAAACGCTCGACGAGGTTCTCGTTGACGATGCCGTCAGACGCGGCGAAG 212553 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGA-GCG--ACACCCAGTGG 869809 ||||||||||| || ||| |||| ||||||||| | | ||| ||| ||||| | Sbjct 212554 AAAGCCAGGACATGGGAGATGAAGTAGCGCTCGTCATTGTTGAGGCGGTTGTTCCAGTCG 212613 Query 869810 ACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTG 869869 ||| | || || | |||||| || ||||||| || ||||| ||||| ||| Sbjct 212614 TGCAGGTCCTTGGACAGATCGATCTCCTCAGCAGTCCAGAAGGAAGCCTCTGCCTTCTTG 212673 Query 869870 TACATCTCCCA 869880 ||||||| ||| Sbjct 212674 TACATCTGCCA 212684 Score = 95.1 bits (104), Expect = 1e-13 Identities = 139/195 (71%), Gaps = 9/195 (5%) Strand=Plus/Plus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 ||| || || ||| ||||| ||||| |||| || || ||||||||||| ||||| Sbjct 212092 ACCCTCATCACGAGAGATCAGCTCGTTAGAGAAGGTCAGACCAGGCATGAGGCCACGCTT 212151 Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 ||| ||||| ||||| | | |||| ||| ||||| ||||| ||||| || || || || Sbjct 212152 CTTCAGCCAGAAGATAGAGGCGAAAGAGCCAGAGAAGAAGATACCCTCAACAGCAGCGAA 212211 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTG---TTGATCCACTTCATCGC 869355 | | | | |||| ||| || ||| || ||||||| | |||||| || || Sbjct 212212 GGCAACCAAGCGCTGGGCGAAAGTG--GA----CTCCTTGTCCTGGATCCAGCGAATGGC 212265 Query 869356 CCAGTCGGCCTTTTT 869370 |||||||||||| || Sbjct 212266 CCAGTCGGCCTTCTT 212280 >seq820 Length=255357 Score = 129 bits (142), Expect = 7e-24 Identities = 95/111 (86%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 || |||||||||||||| ||||| |||| ||||| | || |||||| |||| |||||| Sbjct 231205 GCTGCCAACTACCTCGATATCAAAGCTCTTCTCGACGTCGGCTGCAAGACTGTTGCCAAC 231264 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAG 1592296 ||||||||||||||||| ||||| ||||| ||||||||||| |||||| || Sbjct 231265 ATGATCAAGGGCAAGTCTCCCGAAGAGATTCGCAAGACCTTCAACATCCAG 231315 >seq578 Length=440600 Score = 114 bits (126), Expect = 2e-19 Identities = 121/157 (77%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 19045 AGGACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCG 19104 |||||||||| || || || ||||| |||||| | |||||||| | || ||||||| Sbjct 292318 AGGACAGCATTGGAGGAACCGTGACTTGCGTGATCAGAAACGTGCCAGTCGGTCTCGGCG 292259 Query 19105 AGCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCA 19164 |||| ||||| |||||| | ||||| ||| |||||||||||||| || || || | Sbjct 292258 AGCCTTGCTTCGACAAGCTGGAGGCTAAGCTGGCCCACGCCATGCTCAGTATTCCAGCTA 292199 Query 19165 CCAAGGGATTCGAGATTGGCAGCGGGTTTGCGGGTGC 19201 |||||||||| || ||||| | | ||||| |||| || Sbjct 292198 CCAAGGGATTTGAAATTGG-ATCTGGTTT-CGGGGGC 292164 >seq728 Length=11653 Score = 98.7 bits (108), Expect = 1e-14 Identities = 152/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| ||||| || | | ||| || || || ||||| ||||| || || | || Sbjct 4445 GCTTGGCGAGTTCACCAGGGAGGATGAGACGAACAGCGGTTTGGATTTCACGAGAAGAGA 4386 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| |||||||| | |||| | ||| || ||| | || || || | | Sbjct 4385 TGGTGGAACGCTTGTTGTAAGCAGCCAACTTGGAGGCTTCAGTGGCAATACGTTCAAAGA 4326 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 | || |||||||| ||||||| || ||||| | |||||||||||| || ||||||| Sbjct 4325 TATCATTGACAAAAGAGTTCAAGATGGACATGGCCTTGTTGGAGATACCGGTATCGGGGT 4266 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559 | || ||||| | |||||||||||| | || ||||| Sbjct 4265 GGACTTGCTTCAAGACCTTGTAGATGTAAGAGGAGTA 4229 >seq723 Length=18298 Score = 89.7 bits (98), Expect = 6e-12 Identities = 141/202 (70%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1630076 AGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGACTCGCCGTTGG 1630135 |||| || ||||| |||||||| | |||||| || | | ||| ||||| ||||| | Sbjct 6004 AGCGAGCAGTGTCATTAAAGACTCTGAGCATTGGAATAATGCCATTGGAGGTACCGTTTG 6063 Query 1630136 TGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCGATGCCGCCGG 1630195 | || || | || | ||| | | | || | ||| || || |||| ||| | ||||| | Sbjct 6064 TTCCTGCGATATAAGAGCCAGAGCCACGAATCTTTTGAGCAGCAACGCCAACACCGCCAG 6123 Query 1630196 CCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCGATCGAGTCGG 1630255 | ||||||||||| | || ||| ||| || ||||||||||| ||||| ||| Sbjct 6124 CAGACTTGGAGATACGAGCACACGTGGTGATAGTATCGTAGATGCCTTCGATACTGTCCT 6183 Query 1630256 CCTTCATGTCCACGAGAAAGCA 1630277 | ||||| | || || ||||| Sbjct 6184 CTTTCATTTGAACAAGGAAGCA 6205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107070019472231