Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosporium_20cladosporioides_20[genbank_20GCA_5F001931875.2_202017 -02-15] 843 sequences; 47,573,060 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq744 244 8e-60 >seq744 Length=38458 Score = 244 bits (270), Expect = 8e-60 Identities = 586/874 (67%), Gaps = 18/874 (2%) Strand=Plus/Minus Query 43730 ATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTG 43789 || |||||| | || || ||||| | || || ||||||||||| |||||| | |||||| Sbjct 31386 ATCTGGCAATTCTATAAGAAAGCTGAAGCTTCCTTTTGGACAGCTGAAGAAATCGATTTG 31327 Query 43790 ACTAAAGACTTAGCACATTGG-ATTGCATTAAAACC-ACAAGAAAAACAT-TTTATATCT 43846 | || ||| | ||||| | || | ||| | || || | | ||||| ||| Sbjct 31326 AGCAAGGACCTTCATGATTGGGAAAACAAGATGACCGAAAACGAACGCTTCTTTATCTCT 31267 Query 43847 TTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTT-AGTCG 43905 || || || || ||||||| || || || || |||||||| |||||| | Sbjct 31266 CGCGTCTTAGCCTTCTTTGCTGGTTCAGATGGCATTGTTAATGAAAACTTGGTTCAAAAC 31207 Query 43906 GTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCAT 43965 |||| | | ||||| | | || ||||| |||||| ||||| |||||||| || Sbjct 31206 TTTTGTG-ATGAAGTCAAGATTCCTGAAGCTAAATGTTTCTATGGCTTTCAAATCATGAT 31148 Query 43966 AGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCA 44025 ||||||||||| | |||| ||||||||| |||| || || || ||||||||| || Sbjct 31147 TGAAAATATTCACGCAGAAACTTACAGTCTTTTGATTGACACTTATATCAAAGATAACCA 31088 Query 44026 CGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGA 44085 ||||| | | ||| ||| || || || | ||| || ||| || || || Sbjct 31087 AGAGAAAGAAATGCTCTTTTCTGCTATTGACACTATCCCTTGTATCAAAAGAAAGGCTGA 31028 Query 44086 CTGGGCCCTTAAATGGATAAATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGC 44145 |||||| | || ||||| || || | |||||||| || || ||||| || ||||| Sbjct 31027 TTGGGCCTTCAAGTGGATTTCCTCTAACGGTTCTTTTGCTGAGCGTCTTGTTGCCTTTGC 30968 Query 44146 AGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACG 44205 | ||| ||||| |||||||| || || || ||||| |||| |||||| | |||||||| Sbjct 30967 TGCTGTCGAAGGTATTTTCTTCTCTGGTTCCTTTGCTTCCATTTTTTGGCTCAAGAAACG 30908 Query 44206 AGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACA 44265 |||||||||||||| ||||| || ||||| || || |||||||||||||| | || Sbjct 30907 TGGTTTGATGCCTGGTTTGACATTCAGCAATGAATTGATCTGTCGTGATGAAGGCCTTCA 30848 Query 44266 TTGCGATTTTGCTTGCTTGTTACTTGGATATCTAGGAGACGATAAGCCTTC-ATGTAAGA 44324 | || |||||||| | ||| || |||| | ||||| | | | |||| Sbjct 30847 TACTGACTTTGCTTGTCTTTTATTTACCCATCTTCG------TAAGCGTCCTAGCCAAGA 30794 Query 44325 --CAATTACAGATATTGTTGTAGAGGCAGTAAAGATAGAACAAGAATTTATGACAACAGC 44382 | | ||||| | | || || || | || ||||| |||||| |||| || Sbjct 30793 ACGCGTCAAGGATATCATCTTGGAAGCTGTCAGCATTGAACAGGAATTTTTGACGGATGC 30734 Query 44383 ATTACCTGTAAATTTAATAGGAATGAATGAACTTTTGATGAACCAATATATTGAATACAT 44442 | || || | | || || |||||| ||||||| |||||| || |||| | | Sbjct 30733 TCTTCCCGTTGCTCTCATCGGCATGAATTCTGCTTTGATGTGCCAATACATCGAATTCGT 30674 Query 44443 TGCAGATCGTTTACTTTTGGAACTGGGTTGCGATAAACACTATATTG-TACAAAACCCGT 44501 ||| |||||| | | | | || || | || || || || | ||| || || | Sbjct 30673 TGCTGATCGTCTCATGGTTGCTCTTGGATTTGACAAGATTTACATGGCTAC-CAATCCAT 30615 Query 44502 TTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAACGCGTTG 44561 |||| |||||||| | || || | ||||||| || ||||| |||||||| || || Sbjct 30614 TTGACTTTATGGACATGATCTCTCTTCAAGGCAAGACCAACTTCTTTGAAAAGCGTGTCT 30555 Query 44562 GAGAATATCAGCGAATGGGCGTCATGATAACAAG 44595 || ||||| || || |||||| |||||| Sbjct 30554 CTGACTATCAACGTGCTGGTGTCATG--AACAAG 30523 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397451916512215