Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosporium_20cladosporioides_20[genbank_20GCA_5F001931875.2_202017 -02-15] 843 sequences; 47,573,060 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq578 125 9e-24 seq657 114 2e-20 seq347 109 7e-19 seq268 109 7e-19 seq744 100 4e-16 seq219 96.9 4e-15 >seq578 Length=440600 Score = 125 bits (138), Expect = 9e-24 Identities = 404/619 (65%), Gaps = 16/619 (3%) Strand=Plus/Minus Query 118942 TTGTG-TAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCT 119000 ||||| || || || |||||||| || || | | || || || || || |||| || | Sbjct 116016 TTGTGGTACAGAGCCTCAAACTCATCGCCATAGACATCAGAAAGACCGGGAGCCTCATTT 115957 Query 119001 GGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATC 119060 |||||||| || | ||| | ||| |||||| |||||||||||||| || || || Sbjct 115956 GGGCAGAATAGGGTCCAGTCACCGTTAGACTCAACACGCTTCATGAAGAGATCGGGAGTC 115897 Query 119061 CAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAAC 119120 ||||| || ||||||| || || | | ||||| | || || || || | Sbjct 115896 CAGAGGGCATAGAAGAGGTCACGTGCTCTGACCTCTTCCTTACCGTGGTTCTTGCGAAGG 115837 Query 119121 TCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTA 119180 ||||| || || | ||| || | |||||| || |||||||| | |||| | || | Sbjct 115836 TCCAAGAACTCAAAGATGTCGGAGTGCCAGGGCTCCAGGTAGATAGCGAAAGCACC---A 115780 Query 119181 CGACG------ACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATT 119234 | || || |||||| || || || |||||| ||| || || |||||||| Sbjct 115779 GGGCGCTTGTTCCCGCCCTGGTCAACGTATCTTGCAGTGTTGTTGAACACTCGAAGCATA 115720 Query 119235 GGAATGATACCATCGGATTGGCCATTTGT-CCCCCGA-ATACGAGACTTATTGGCTCTGA 119292 || | | || | ||| || || || || |||| || || || | || | || Sbjct 115719 GGGACAAGCCCGTTGGAAGTTCCGTTAGTACCACCGATGTAAGAACCT--GTAGCACGGA 115662 Query 119293 CATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGA 119352 | ||||| || | ||||||||| || || ||| ||||| || || | | | Sbjct 115661 TACGGTGGACGTTGAGACCAATACCACCCGCAGTCTTGGAGATCATGGCACAAGTCTTCA 115602 Query 119353 GACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACA 119412 || | ||||| || || || ||| |||| | |||| ||||||||| | || Sbjct 115601 AGGTGTCATAGATACCCTCAATGCTGTCCTCCTTCATATCGATAAGGAAGCAGGAGGCCA 115542 Query 119413 TTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAA-CATACCT 119471 || ||| || ||||| |||||||| ||||| || | ||||| |||| || | Sbjct 115541 GCTGCGGCTGAGGAGTACCGGCGTTGAACAGAGTCGGCGAGGCGTGAGTGAAGTATTTC- 115483 Query 119472 TGGGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATC 119531 ||||||||| | ||||||||| | || | ||| || ||||| || |||| | Sbjct 115482 TGGGACATCAGATTGTAGGTCTCGATAACCTTCTCGAGGTCATCACCGTGGATTCCGACC 115423 Query 119532 GAGACCCGCATAAACATGT 119550 | || ||||||| ||||| Sbjct 115422 GCAACACGCATAATCATGT 115404 Score = 93.3 bits (102), Expect = 5e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 118750 CAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTT 118809 |||||||||| || || || ||||| | ||| || || || || |||| |||||| | Sbjct 116262 CAGTGTACTCGATGATCTCAGTGCAGAGGTTAGAGCTGCGGATAGTACCCAGGTTCTTCT 116203 Query 118810 GATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTT 118869 | || ||| |||| |||||||||||||| |||||| | || | || ||||| || | Sbjct 116202 GGTTGCTCTTCTTGTTGCACGCATCCTTGTACAGCATGAAGGGGTTACCGGTCTCGGTCT 116143 Query 118870 GGGACTTGAGAATAGCCTTCCAGA 118893 ||| || |||||| || | ||||| Sbjct 116142 GGGCCTCGAGAATGGCATACCAGA 116119 >seq657 Length=446211 Score = 114 bits (126), Expect = 2e-20 Identities = 104/131 (79%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086 ||| |||||||| ||||| ||||| || || || |||||| |||||| |||||||| || Sbjct 212086 GTGCAGACCCTCATCACGAGAGATCAGCTCGTTAGAGAAGGTCAGACCAGGCATGAGGCC 212145 Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 130146 |||||||||| |||||| || | || ||||||||||||||||| ||||| ||| Sbjct 212146 ACGCTTCTTCAGCCAGAAGATAGAGGCGAAAGAGCCAGAGAAGAAGATACCCTCAACAGC 212205 Query 130147 CGCGAACGCAA 130157 ||||| |||| Sbjct 212206 AGCGAAGGCAA 212216 >seq347 Length=15602 Score = 109 bits (120), Expect = 7e-19 Identities = 218/323 (67%), Gaps = 0/323 (0%) Strand=Plus/Minus Query 179737 AGGAGCGATGGCCAGAAGTAGTGGATCATATTGAGGATGAGACCCTTAATGTGTGAACCA 179796 || ||||| || | | | ||| ||| | |||| ||| |||||||| || ||||||||| Sbjct 5287 AGAAGCGAGGGGAACATGGAGTCGATAAAGTTGATGATCAGACCCTTGATATGTGAACCA 5228 Query 179797 TCGTTATCCGCATCCGTCATAATCATAAGCCGACCATAGCGAAGCTCGGAAACATCTTGA 179856 || | ||| ||| ||||| ||||| | |||||||| || | ||| |||| || | Sbjct 5227 TCATGATCTTGATCTGTCATGATCATCAAACGACCATATCGTAACTCATCAACACTTTCA 5168 Query 179857 TAATCCTTACCTTGTTGAAGACCCAAGATCTTCTTGAGATCATTGAACTCTTGGTTTGAT 179916 || | ||||| || |||||||| | || ||||| | |||| |||| || Sbjct 5167 TACTTTTTACCATGCTGAAGACCAAGAATAGCCTTGATGTTTTTGATTTCTTCATTCTTC 5108 Query 179917 GTGAGTTGCGCCACTGAAGCATCTCGGACATTTTTACACTTCCCACGGAGAGGGAACACA 179976 |||||| || ||| |||| || || || || ||||| | ||||| ||| Sbjct 5107 ATGAGTTCAGCATTAGAAACATCACGAACGTTCAATAGTTTACCACGAATGGGGAAAACA 5048 Query 179977 CCGTAGTGATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTCTTCGCGGAATCA 180036 || |||| ||||||||||| || || | |||| | | || | ||| || |||||| Sbjct 5047 CCATAGTAGTCACGACCAACTACTGACATACCACTCAAGACAAGCGACTTGGCTGAATCA 4988 Query 180037 CCCTCCGTCACGATGAGCGTACA 180059 || || || | || || ||||| Sbjct 4987 CCTTCTGTGATTATCAGAGTACA 4965 >seq268 Length=14648 Score = 109 bits (120), Expect = 7e-19 Identities = 218/323 (67%), Gaps = 0/323 (0%) Strand=Plus/Minus Query 179737 AGGAGCGATGGCCAGAAGTAGTGGATCATATTGAGGATGAGACCCTTAATGTGTGAACCA 179796 || ||||| || | | | ||| ||| | |||| ||| |||||||| || ||||||||| Sbjct 5329 AGAAGCGAGGGGAACATGGAGTCGATAAAGTTGATGATCAGACCCTTGATATGTGAACCA 5270 Query 179797 TCGTTATCCGCATCCGTCATAATCATAAGCCGACCATAGCGAAGCTCGGAAACATCTTGA 179856 || | ||| ||| ||||| ||||| | |||||||| || | ||| |||| || | Sbjct 5269 TCATGATCTTGATCTGTCATGATCATCAAACGACCATATCGTAACTCATCAACACTTTCA 5210 Query 179857 TAATCCTTACCTTGTTGAAGACCCAAGATCTTCTTGAGATCATTGAACTCTTGGTTTGAT 179916 || | ||||| || |||||||| | || ||||| | |||| |||| || Sbjct 5209 TACTTTTTACCATGCTGAAGACCAAGAATAGCCTTGATGTTTTTGATTTCTTCATTCTTC 5150 Query 179917 GTGAGTTGCGCCACTGAAGCATCTCGGACATTTTTACACTTCCCACGGAGAGGGAACACA 179976 |||||| || ||| |||| || || || || ||||| | ||||| ||| Sbjct 5149 ATGAGTTCAGCATTAGAAACATCACGAACGTTCAATAGTTTACCACGAATGGGGAAAACA 5090 Query 179977 CCGTAGTGATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTCTTCGCGGAATCA 180036 || |||| ||||||||||| || || | |||| | | || | ||| || |||||| Sbjct 5089 CCATAGTAGTCACGACCAACTACTGACATACCACTCAAGACAAGCGACTTGGCTGAATCA 5030 Query 180037 CCCTCCGTCACGATGAGCGTACA 180059 || || || | || || ||||| Sbjct 5029 CCTTCTGTGATTATCAGAGTACA 5007 >seq744 Length=38458 Score = 100 bits (110), Expect = 4e-16 Identities = 181/262 (69%), Gaps = 7/262 (3%) Strand=Plus/Plus Query 130028 TGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCC 130087 || || || || ||||| |||| | |||||| ||| || ||| ||||| | ||| Sbjct 30848 TGAAGGCCTTCATCACGACAGATCAATTCATTGCTGAATGTCAAACCAGGCATCAAACCA 30907 Query 130088 CGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACAC 130147 || ||||| | ||| ||||| | | ||| || ||||||||||| || || || ||| Sbjct 30908 CGTTTCTTGAGCCAAAAAATGGAAGCAAAGGAACCAGAGAAGAAAATACCTTCGACAGCA 30967 Query 130148 GCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGCC 130207 || || |||| |||||||||||||| || | | || | || |||||| | ||| Sbjct 30968 GCAAAGGCAACAAGACGCTCAGCAAAAGAACCG---TTAGAGGAAATCCACTTGAAGGCC 31024 Query 130208 CACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTTT 130267 || | |||||| | | |||||| |||| || | || || |||||| | || || Sbjct 31025 CAATCAGCCTTTCTTTTGATACAAGGGATAGTGTCAATAGCAGAAAAGAG--CATTTCTT 31082 Query 130268 TCTGATGG--ATCTTTGATGTA 130287 ||| ||| ||||||||| || Sbjct 31083 TCTCTTGGTTATCTTTGATATA 31104 >seq219 Length=30711 Score = 96.9 bits (106), Expect = 4e-15 Identities = 261/398 (66%), Gaps = 6/398 (2%) Strand=Plus/Plus Query 11802 TATCAAGCATCTTCCTCGGAGATGTTTGGTAAAGTTAGGGAATCCCCACAAAATGAGGAG 11861 |||||||| ||| |||| || | | ||||||||| ||| | || ||||| || Sbjct 12746 TATCAAGCTTCTACCTCTGAACTCTATGGTAAAGTAGTTGAAACACCCCAAAAGGAAACA 12805 Query 11862 ACGCCCTTCTATCCACGATCCGTCTATGGCGTCTCAAAGGTTGCGGCACATTGGCTCGTG 11921 || ||||||||||| || ||| ||||| || | ||| || | ||||| | | Sbjct 12806 ACACCCTTCTATCCCCGTTCCCCTTATGGTGTAGCCAAGCTTTATGGTTATTGGATTACG 12865 Query 11922 AAGAATTACCGAGAATCCTATGGTCTCTTTGCGTGCTCTGGTATTCTCTTCAACCACGAG 11981 || ||||| ||||| || | | ||||| || ||||||||| |||||||| || Sbjct 12866 GTCAACTACCGTGAATCATACAATATGTTTGCCTGTAATGGTATTCTATTCAACCATGAA 12925 Query 11982 TCACCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCACCGATGGTATCAAACAAAT- 12040 ||||| |||||||||| ||||| || ||||| || || | || | | || Sbjct 12926 TCACCTCGTCGTGGCCGTACCTTCGTTACCCGAAAGATTACTCGTGCTGTCGCAGATATC 12985 Query 12041 --CGTGGCGGGTGAGAGGGAGTTCATTGAATTGGGGAACCTCAACGCCGAGAGGGACTGG 12098 | ||| || | |||| | || | | || || | | || || | || ||| Sbjct 12986 CACTTGGGACGTCA---AGAGTGCCTTTATCTCGGTAATATTGATGCTAAGCGTGATTGG 13042 Query 12099 GGACATGCCAAGGACTATGTTGAAGCCATGTGGCTCGTACTTCAACAAGAAGAGGCGGAC 12158 |||||||| || ||||| |||| ||||||||| | || || ||||| || | | Sbjct 13043 GGACATGCTCGTGATTATGTCGAAGGTATGTGGCTCATGCTGCAGCAAGATCAGCCTCAA 13102 Query 12159 GAATATGTCGTCGCGACGGGGGAGACACACTCCGTCAG 12196 || | ||| | || || || || |||||| | ||||| Sbjct 13103 GATTTCGTCTTGGCTACTGGTGAAACACACACAGTCAG 13140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618428683239080