Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosporium_20cladosporioides_20[genbank_20GCA_5F001931875.2_202017 -02-15] 843 sequences; 47,573,060 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq744 140 4e-28 seq578 125 8e-24 seq657 123 3e-23 seq347 105 8e-18 seq268 105 8e-18 seq723 96.9 4e-15 >seq744 Length=38458 Score = 140 bits (154), Expect = 4e-28 Identities = 289/417 (69%), Gaps = 11/417 (3%) Strand=Plus/Minus Query 94531 GCATTCTTTGCTGGATCCGATGGAATTGTTTTTGAGAATATCAATAACAACTTTGCTGAT 94590 || ||||||||||| || ||||| |||||| ||| || | | | |||||| |||| Sbjct 31257 GCCTTCTTTGCTGGTTCAGATGGCATTGTTAATGAAAACTTGGTTCAAAACTTTTGTGAT 31198 Query 94591 GAGGTGCA-ATCCTCTGAAGCGAGATCCTTCTATGCGTATCAGTGTCATAAT-GAAATGG 94648 || || | || | ||||||| | || ||||||| | ||| |||| || |||| Sbjct 31197 GAAGTCAAGATTC-CTGAAGCTAAATGTTTCTATGGCTTTCAAA-TCATGATTGAAAATA 31140 Query 94649 TGCATGGGGAGACATACAGTAAACTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGA 94708 | || | || || |||||| | || |||| ||||| || ||| ||||| Sbjct 31139 TTCACGCAGAAACTTACAGTCTTTTGATTGACACTTATATCAAAGATAACCAAGAGAAAG 31080 Query 94709 AGCAGCTCTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAG-CGGATTGGGCT 94767 | ||||||| || || | || | || ||||| |||||||||| | |||||||| Sbjct 31079 AAATGCTCTTTTCTGCTATTGACACTATCCCTTGTAT-CAAAAGAAAGGCTGATTGGGCC 31021 Query 94768 ATGAAGTGGTTTGATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGT 94827 | |||||| || | || || |||| ||||||||||| || | || ||||| | Sbjct 31020 TTCAAGTGGATTTCCTCTAA--CG-GTTCTTTTGCTGAGCGTCTTGTTGCCTTTGCTGCT 30964 Query 94828 GTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGG 94886 || || ||||| ||||||||||||||||| ||| | |||| |||||||||||| || || Sbjct 30963 GTCGAAGGTATTTTCTTCTCTGGTTCCTT-TGCTTCCATTTTTTGGCTCAAGAAACGTGG 30905 Query 94887 TCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCA 94943 | | ||||| ||| | ||| ||| || | |||| |||||| || || || || Sbjct 30904 TTTGATGCCTGGTTTGACATTCAGCAATGAATTGATCTGTCGTGATGAAGGCCTTCA 30848 >seq578 Length=440600 Score = 125 bits (138), Expect = 8e-24 Identities = 408/626 (65%), Gaps = 16/626 (3%) Strand=Plus/Plus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| ||||| | ||||| || || |||| || || || || ||| | || || Sbjct 115397 CCTCAGCACATGATTATGCGTGTTGCGGTCGGAATCCACGGTGATGACCTCGAGAAGGTT 115456 Query 104282 TTGGAGACATACGACAAGATGTCCCAAGGTATG-TTCATTCACGCAACACCAACCCTCTT 104340 | ||||| ||| | ||||||||| | || |||| |||||| | || || || || Sbjct 115457 ATCGAGACCTACAATCTGATGTCCCA-GAAATACTTCACTCACGCCTCGCCGACTCTGTT 115515 Query 104341 CAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 104400 ||| || ||||| || || || || || ||||||||||||| | |||||||| Sbjct 115516 CAACGCCGGTACTCCTCAGCCGCAGCTGGCCTCCTGCTTCCTTATCGATATGAAGGAGGA 115575 Query 104401 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 104460 | || | |||||||||| || | | | ||||| ||||| ||| || || Sbjct 115576 CAGCATTGAGGGTATCTATGACACCTTGAAGACTTGTGCCATGATCTCCAAGACTGCGGG 115635 Query 104461 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAA 104520 |||||||| | || |||| | | | || | ||| || | || || || Sbjct 115636 TGGTATTGGTCTCAACGTCCACCGTATCCGTGCTACAGGTTCTTACATCGGTGGTACTAA 115695 Query 104521 TGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGT 104580 || || | || || | || |||||||| || || ||| ||| || | || || Sbjct 115696 CGGAACTTCCAACGGGCTTGTCCCTATGCTTCGAGTGTTCAACAACACTGCAAGATACGT 115755 Query 104581 AAATCAAGCTGGGCGTCGA-AAG------GGATCTATCGCAGTCTATCTTGAGCCATGGC 104633 | || ||||| | ||| || || |||| |||| || ||||| |||| Sbjct 115756 TGACCA----GGGCGGGAACAAGCGCCCTGGTGCTTTCGCTATCTACCTGGAGCCCTGGC 115811 Query 104634 ACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGT 104693 || | || ||| | |||||| | || | || ||||| ||| | || |||| | | Sbjct 115812 ACTCCGACATCTTTGAGTTCTTGGACCTTCGCAAGAACCACGGTAAGGAAGAGGT-CAGA 115870 Query 104694 GC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAG 104752 || || || ||||||| || ||||||| ||| ||||||||||||||| | |||||| Sbjct 115871 GCACGTGACCTCTTCTATGCCCTCTGGACTCCCGATCTCTTCATGAAGCGTGTTGAGTCT 115930 Query 104753 AGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGT 104812 | || | ||| | || || || ||| | |||| || ||||| || |||| | || Sbjct 115931 AACGGTGACTGGACCCTATTCTGCCCAAATGAGGCTCCCGGTCTTTCTGATGTCTATGGC 115990 Query 104813 GAGGAGTTTGAAGCCCTTTA-CACAA 104837 || |||||||| || || || ||||| Sbjct 115991 GATGAGTTTGAGGCTCTGTACCACAA 116016 >seq657 Length=446211 Score = 123 bits (136), Expect = 3e-23 Identities = 98/118 (83%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 94827 TGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGG 94886 |||||||||||||||||||||||| || ||| | |||| | ||||| |||||||| || Sbjct 212203 TGTTGAGGGTATCTTCTTCTCTGGCTCTTTCGCCTCTATCTTCTGGCTGAAGAAGCGTGG 212144 Query 94887 TCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 94944 |||||||| ||||| |||||| |||||||| ||||||||||| ||||| || ||| Sbjct 212143 CCTCATGCCTGGTCTGACCTTCTCTAACGAGCTGATCTCTCGTGATGAGGGTCTGCAC 212086 >seq347 Length=15602 Score = 105 bits (116), Expect = 8e-18 Identities = 199/293 (68%), Gaps = 0/293 (0%) Strand=Plus/Minus Query 169160 TTGAGAATGAGACCCTTGATGTGGGAACCGTCGTTATCGGCATCCGTCATGATCATGAGA 169219 |||| || ||||||||||| || ||||| || | ||| ||| ||||||||||| | | Sbjct 5257 TTGATGATCAGACCCTTGATATGTGAACCATCATGATCTTGATCTGTCATGATCATCAAA 5198 Query 169220 CGACCATACCGAAGCTCGGAAACATCTTGATAGTCCTTACCCTGTTGAAGACCCAAGATC 169279 |||||||| || | ||| |||| || ||| | ||||| || |||||||| | || Sbjct 5197 CGACCATATCGTAACTCATCAACACTTTCATACTTTTTACCATGCTGAAGACCAAGAATA 5138 Query 169280 TTCTTGAGATCGTTGAACTCTTGGTTTGATGTGAGCTGTGTGACAGAGGCATCGCGAACA 169339 ||||| | |||| |||| || |||| | | ||| |||| ||||| Sbjct 5137 GCCTTGATGTTTTTGATTTCTTCATTCTTCATGAGTTCAGCATTAGAAACATCACGAACG 5078 Query 169340 TTCTTACACTTCCCACGAAGAGGGAAGACACCGTAGTGATCACGACCAACGACGGAGAGA 169399 ||| || ||||||| ||||| ||||| |||| ||||||||||| || || | | Sbjct 5077 TTCAATAGTTTACCACGAATGGGGAAAACACCATAGTAGTCACGACCAACTACTGACATA 5018 Query 169400 CCCGCGACTGCGAGAGTCTTCGCCGAGTCACCCTCGGTGACGATGAGCGTACA 169452 || | | || | ||| || || ||||| || |||| || || ||||| Sbjct 5017 CCACTCAAGACAAGCGACTTGGCTGAATCACCTTCTGTGATTATCAGAGTACA 4965 >seq268 Length=14648 Score = 105 bits (116), Expect = 8e-18 Identities = 199/293 (68%), Gaps = 0/293 (0%) Strand=Plus/Minus Query 169160 TTGAGAATGAGACCCTTGATGTGGGAACCGTCGTTATCGGCATCCGTCATGATCATGAGA 169219 |||| || ||||||||||| || ||||| || | ||| ||| ||||||||||| | | Sbjct 5299 TTGATGATCAGACCCTTGATATGTGAACCATCATGATCTTGATCTGTCATGATCATCAAA 5240 Query 169220 CGACCATACCGAAGCTCGGAAACATCTTGATAGTCCTTACCCTGTTGAAGACCCAAGATC 169279 |||||||| || | ||| |||| || ||| | ||||| || |||||||| | || Sbjct 5239 CGACCATATCGTAACTCATCAACACTTTCATACTTTTTACCATGCTGAAGACCAAGAATA 5180 Query 169280 TTCTTGAGATCGTTGAACTCTTGGTTTGATGTGAGCTGTGTGACAGAGGCATCGCGAACA 169339 ||||| | |||| |||| || |||| | | ||| |||| ||||| Sbjct 5179 GCCTTGATGTTTTTGATTTCTTCATTCTTCATGAGTTCAGCATTAGAAACATCACGAACG 5120 Query 169340 TTCTTACACTTCCCACGAAGAGGGAAGACACCGTAGTGATCACGACCAACGACGGAGAGA 169399 ||| || ||||||| ||||| ||||| |||| ||||||||||| || || | | Sbjct 5119 TTCAATAGTTTACCACGAATGGGGAAAACACCATAGTAGTCACGACCAACTACTGACATA 5060 Query 169400 CCCGCGACTGCGAGAGTCTTCGCCGAGTCACCCTCGGTGACGATGAGCGTACA 169452 || | | || | ||| || || ||||| || |||| || || ||||| Sbjct 5059 CCACTCAAGACAAGCGACTTGGCTGAATCACCTTCTGTGATTATCAGAGTACA 5007 >seq723 Length=18298 Score = 96.9 bits (106), Expect = 4e-15 Identities = 285/429 (66%), Gaps = 13/429 (3%) Strand=Plus/Minus Query 104320 TCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTT 104379 ||| || ||||| || | ||||| ||||||||||| | ||| ||| |||| |||||||| Sbjct 6260 TCATGCTACACCTACATTGTTCAACGCTGGTACACCTAAACCTCAATTGTCTAGTTGCTT 6201 Query 104380 CCTTATCGCCAACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGC 104439 |||| | | || |||||| ||| | || ||||| | ||| | || |||||| Sbjct 6200 CCTTGTTCAAATGAAAGAGGACAGTATCGAAGGCATCTACGATACTATCACCACGTGTGC 6141 Query 104440 GCAAATCTCAAAGTGGGCTGGGGGTATTGG-GATGCACATC-CATGATGTGAGAGCCAAT 104497 | ||||| |||| ||||| ||| |||| | ||| || | ||| | | || | Sbjct 6140 TCGTATCTCCAAGTCTGCTGGCGGTGTTGGCGTTGCTGCTCAAAAGATTCGTG-GC---T 6085 Query 104498 AAATCTCGTAT-TCG-GGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCG 104555 ||| ||| ||| || ||||| ||| || |||| |||||||||||||| | | Sbjct 6084 CTGGCTCTTATATCGCAGGAACAAACGGTACCTCCAATGGCATTATTCCAATGCTCAGAG 6025 Query 104556 TATTTAACGCCACAGCGCGCTATGTAAATCAAGCTGGGCGT---CG-AAAGGGATCTATC 104611 | ||||| | ||| || |||| ||| | |||| || || || || || | || | Sbjct 6024 TCTTTAATGACACTGCTCGCTTTGTGACACAAGGAGGTGGTAAACGCAACGGTAACT-TT 5966 Query 104612 GCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAAC 104671 || |||||| | || || ||||| | || | | || ||| | || ||||| ||| Sbjct 5965 GCTGTCTATATAGAACCTTGGCATGTCGACGTATTCGAATTCTTGGACTTGCGCAAGAAC 5906 Query 104672 CAAGGTGACGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTC 104731 | |||| ||||| ||| ||||| | |||| | | ||| | || ||||| Sbjct 5905 AATGGTGCTGAGGAAATGCGCGCACGCGACTTGTTCTTGGGATTATGGGTGCCTGATCTT 5846 Query 104732 TTCATGAAG 104740 |||||| || Sbjct 5845 TTCATGGAG 5837 Score = 93.3 bits (102), Expect = 5e-14 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 105044 GCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACA 105103 ||||| ||||| | || || ||||| | ||||||| ||| || ||| ||||||||| Sbjct 5378 GCTGTCTGTAATTTGGCTTCTCTCGCTTTACCCAAGTTTGTCAATAGAGAAACAAAGACA 5319 Query 105104 TTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTT 105163 ||||||| |||||| || || ||||||| ||| || || || || |||| || Sbjct 5318 TTTGATTTTGAAAAGCTTCATCAAGTTACCAAAGTAGTGACACGCAATCTGAACAAGGTC 5259 Query 105164 ATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCC 105222 |||||| || | ||| || ||||| || ||||| |||||| |||||||||| Sbjct 5258 ATTGATGTCAACTATTATCCAGTTGAAGAGGCACGTAACAGCAATATGCGACACCGTCC 5200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583254653889320