Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosporium_20sphaerospermum_20[genbank_20GCA_5F001931905.2_202017- 02-15] 959 sequences; 50,156,125 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq207 98.7 8e-16 seq886 89.7 4e-13 seq959 84.2 2e-11 seq360 84.2 2e-11 >seq207 Length=38899 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | ||||||| |||| ||| |||||||| || ||||| ||||||| | Sbjct 527 CCGCCACGCAGACGCAGCACCAAGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAC 468 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | ||||||| ||||| || || || | || || | ||||||||| || Sbjct 467 AGCGTGCGACCGTCCTCGAGCTGCTTACCAGCGAAGATGAGGCGCTGCTGGTCAGGCGGG 408 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| ||||| || || | | ||| || || | || | Sbjct 407 ATACCCTCCTTGTCTTGAATCTTGGACTTGACGTTGTCGATGGTGTCTGACGATTCAACT 348 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | || |||||||||||||| | |||||||| || |||||||| Sbjct 347 TCGAGTGTGATGGTCTTGCCGGTGAGAGTTTTGACGAAGATTTGCAT 301 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| |||| || | ||| ||||||||||||||||| ||||| | Sbjct 299 CCACCACGAAGGCGGAGAACCAGGTGAAGAGTAGACTCCTTTTGAATGTTGTAGTCGGAA 240 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || | ||||| ||||| || || || | || | | ||||||||| || Sbjct 239 AGAGTGCGGCCATCCTCGAGCTGCTTACCAGCGAAGATCAAACGCTGCTGGTCTGGCGGG 180 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| |||||| || || | | ||| ||| || | ||| Sbjct 179 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATAGTGTCGGAAGACTCGACC 120 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | || ||||||||||| || | || ||||| || |||||||| Sbjct 119 TCAAGAGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAGATTTGCAT 73 >seq886 Length=122240 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | ||||||| |||| ||||||||||| || ||||| ||||||| Sbjct 45883 CCGCCACGCAGACGCAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAG 45824 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | ||||||| ||||| || || || | || || | ||||||||| || Sbjct 45823 AGCGTGCGACCGTCCTCGAGCTGCTTACCAGCGAAGATGAGGCGCTGCTGGTCAGGTGGG 45764 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| ||||| || || | | ||| || || || || | Sbjct 45763 ATACCCTCCTTGTCTTGAATCTTGGACTTGACGTTGTCGATGGTGTCTGAGGATTCAACT 45704 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | || ||||| |||||||| | || ||||| || |||||||| Sbjct 45703 TCGAGTGTGATGGTTTTGCCGGTGAGAGTCTTGACGAAGATTTGCAT 45657 >seq959 Length=197118 Score = 84.2 bits (92), Expect = 2e-11 Identities = 118/166 (71%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 20986 CCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAA 21045 |||| || ||||| ||||| | ||||| || ||||||| ||||| ||||| || | | Sbjct 41075 CCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 41016 Query 21046 TAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGC 21105 | || | ||||||||| ||| | ||| |||||||| |||||| ||||| | | Sbjct 41015 TCAGACGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTCACATTGT 40956 Query 21106 CGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGT 21151 ||| || ||| || ||| || | ||| ||||||||||| || Sbjct 40955 CGATGGTGTCAGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGT 40910 >seq360 Length=83424 Score = 84.2 bits (92), Expect = 2e-11 Identities = 118/166 (71%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 20986 CCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAA 21045 |||| || ||||| ||||| | ||||| || ||||||| ||||| ||||| || | | Sbjct 220 CCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 161 Query 21046 TAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGC 21105 | || | ||||||||| ||| | ||| |||||||| |||||| ||||| | | Sbjct 160 TCAGACGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTCACATTGT 101 Query 21106 CGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGT 21151 ||| || ||| || ||| || | ||| ||||||||||| || Sbjct 100 CGATGGTGTCAGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGT 55 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422254264713644