Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosporium_20sphaerospermum_20[genbank_20GCA_5F001931905.2_202017- 02-15] 959 sequences; 50,156,125 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq207 127 6e-24 seq894 109 2e-18 >seq207 Length=38899 Score = 127 bits (140), Expect = 6e-24 Identities = 169/235 (72%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | ||||| || |||||||||||||| |||||||| || | Sbjct 307 TTTGCATACCACCACGAAGGCGGAGAACCAGGTGAAGAGTAGACTCCTTTTGAATGTTGT 248 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || | || || ||||| || || || || ||||| ||||| | ||| ||||| | Sbjct 247 AGTCGGAAAGAGTGCGGCCATCCTCGAGCTGCTTACCAGCGAAGATCAAACGCTGCTGGT 188 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || || || || || || ||||| || || | || || || || || | || || | Sbjct 187 CTGGCGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATAGTGTCGGAAG 128 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || ||||| || | ||||| || || || || || || || || ||||| Sbjct 127 ACTCGACCTCAAGAGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAGATTTGCAT 73 >seq894 Length=188349 Score = 109 bits (120), Expect = 2e-18 Identities = 449/707 (64%), Gaps = 11/707 (2%) Strand=Plus/Minus Query 349197 CCGCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATC 349256 ||||||| || ||||| | ||||| || || ||||| || | | | | | |||| | Sbjct 36190 CCGCTATCGGTATCGACCTTGGTACCACGTACTCTTGCGTGGGTATCTTCCGTGATGACC 36131 Query 349257 GTGTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTA 349316 | | || || ||||| || || || || ||| | || || || || | |||||| || | Sbjct 36130 GCATCGAGATCATTGCCAACGACCAGGGCAACCGCACCACTCCCTCTTTCGTTGCCTTCA 36071 Query 349317 CCGAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAA 349376 |||| || |||||| |||| ||||| || || || || || | || || || | | Sbjct 36070 CCGACACCGAGCGTCTGATCGGTGACTCCGCCAAGAACCAGGTCGCCATGAACCCTCACA 36011 Query 349377 ATACGGTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGAC----AAATCTACA 349432 | || || || || || ||||| || || || | | || ||| | || Sbjct 36010 ACACCGTCTTCGACGCCAAGCGCCTCATCGGCCGCAAGTTCCAGGACGCTGAGGTC---- 35955 Query 349433 CAATCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATT 349492 || | || | || || || || |||| || || || | ||| || || | Sbjct 35954 CAGGCCGACATGAAGCACTTCCCCTTTAAGGTCGTCGAGAAGGCCGGC---AAGCCCGTC 35898 Query 349493 ATTGAGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATG 349552 | |||| || | || || || || | || ||||| || || || || ||| Sbjct 35897 ACCCAGGTCGAGTTCAAGGGCGAGACCAAGGACTTCACTCCCGAGGAGATCTCCTCCATG 35838 Query 349553 GTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCT 349612 | | || ||| || | ||||| | || | |||| || || | ||||| Sbjct 35837 ATCCTCACCAAGATGCGCGAGACCGCTGAGTCCTACCTCGGTGGCACCGTTAACAATGCT 35778 Query 349613 GTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGC 349672 || || || || || ||||| || || || | ||||| || || || || || || Sbjct 35777 GTCATCACCGTCCCCGCCTACTTCAACGACTCTCAGCGCCAGGCCACCAAGGACGCCGGT 35718 Query 349673 AGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCA 349732 || || || | || ||||| | || || || || || |||||||| || || || Sbjct 35717 CTGATCGCCGGTCTCAACGTTCTCCGTATCATCAACGAGCCTACTGCTGCTGCCATCGCC 35658 Query 349733 TATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGT 349792 || || ||||| || | | || || || || |||| || || ||| | |||||| Sbjct 35657 TACGGTCTTGACAAGAAGCAGGAGGGTGAGAAGAACGTTCTCATCTTCGATCTTGGTGGT 35598 Query 349793 GGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACT 349852 ||||| || ||||| || || || || | || ||||| || || || || || | ||| Sbjct 35597 GGTACCTTCGATGTTTCTCTCCTCACCATCGAGGAGGGTATCTTCGAGGTCAAGTCCACT 35538 Query 349853 GCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGT 349899 || ||||| || || | ||||| || || || || || |||||||| Sbjct 35537 GCCGGTGACACCCACTTGGGTGGCGAGGACTTCGACAACCGTCTCGT 35491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515235781785077