Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosporium_20sphaerospermum_20[genbank_20GCA_5F001931905.2_202017- 02-15] 959 sequences; 50,156,125 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq581 118 1e-21 >seq581 Length=38060 Score = 118 bits (130), Expect = 1e-21 Identities = 299/452 (66%), Gaps = 47/452 (10%) Strand=Plus/Plus Query 34385 CGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAG 34444 || ||||| |||||| | ||||| |||||||| ||||||||| |||||||||| || || Sbjct 28236 CGCGAGGAAGGCGACCTCGGCCCCGTCTACGGTTTCCAGTGGCGACACTTTGGCGCCGAA 28295 Query 34445 TATCGGGGGAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTG-CAGTACGTGAT 34503 || | || || | || ||||| | || ||||| | ||||||||| ||| | ||| | Sbjct 28296 TACCAGGACCGCAACGCAGACTACACCGGTCAGGGTGTCGACCAGCTGGCAGAA-GTGGT 28354 Query 34504 CGACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAA 34563 || | ||| ||||||| | ||| | | ||| | | |||| |||||||| Sbjct 28355 GCGCAAGCTAAAGGAGAACCCTTACGACCGCCGAATCATTCTCAGCGCCTGGAACCCCGC 28414 Query 34564 GGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTC----- 34618 ||||||| ||||| ||||| || ||||||| || || ||||||||| Sbjct 28415 GGATCTCAAGAAAATGGCCCTCCCTCCTTGCCACATGTTCGCGCAGTTCTACGTCTCCTT 28474 Query 34619 ----------------------GCGAATGG----------GGA--GCTGTCCTGC-CAGC 34643 ||| |||| ||| ||| || || | | Sbjct 28475 CCCGGCTTCGGCACCCGCGCGAGCGGATGGTTCGAAGAAGGGAACGCT-TCACGCTCTTC 28533 Query 34644 TCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTACGCTC 34703 ||||||| || ||| | |||||||| | || ||||| |||||||||||| |||||| Sbjct 28534 TCTATCAGCGCTCGTGCGACATGGGTCTGGGCGTGCCTTTCAACATTGCTTCGTACGCTT 28593 Query 34704 TGCTCACGTACATGATCGCTCATGTCGTG-GGGTTGGTTCCTGGGGAGC-TGGTGCATAC 34761 |||||||| ||||| | || | | | || | ||||| ||| || ||| || ||| || Sbjct 28594 TGCTCACGCACATGCTGGC-GAGGACTTGCGATTTGGTGCCT-GGCAGCTTGACGCACAC 28651 Query 34762 GTTGGGGGATGCGCATATCTACCTGAACCACA 34793 |||| ||||||||| ||||| || | |||| Sbjct 28652 AATGGGCGATGCGCATGTCTACATGGATCACA 28683 Score = 118 bits (130), Expect = 1e-21 Identities = 299/452 (66%), Gaps = 47/452 (10%) Strand=Plus/Minus Query 6552 TGTGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCA-GCTCCCCAGGAACCAAC 6610 |||| | || ||||| ||||||||| |||| || ||| || ||| || ||| ||||| Sbjct 28683 TGTGATCCATGTAGACATGCGCATCGCCCATTGTGTGCGTCAAGCTGCC-AGGCACCAAA 28625 Query 6611 CC-CACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCAC 6669 | || | | | || | ||||| |||||||| |||||| |||||||||||| ||||| Sbjct 28624 TCGCAAGTCCTC-GCCAGCATGTGCGTGAGCAAAGCGTACGAAGCAATGTTGAAAGGCAC 28566 Query 6670 CCCTAACCCCATGTCTCCCGATCGTTGATAGAGCTG-GCAGGACAGC--TCC-------- 6718 || | |||||||| | ||| || |||||||| | || || ||| ||| Sbjct 28565 GCCCAGACCCATGTCGCACGAGCGCTGATAGAGAAGAGCGTGA-AGCGTTCCCTTCTTCG 28507 Query 6719 --CCATTCGC---------------------------GACGTAGAATTGGCAGAGGGTGT 6749 |||| ||| ||||||||| || || ||| Sbjct 28506 AACCATCCGCTCGCGCGGGTGCCGAAGCCGGGAAGGAGACGTAGAACTGCGCGAACATGT 28447 Query 6750 GGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCACATCACGATCC 6809 |||| || ||||| ||||| ||||||| |||||||| |||| | | ||| | Sbjct 28446 GGCAAGGAGGGAGGGCCATTTTCTTGAGATCCGCGGGGTTCCAGGCGCTGAGAATGATTC 28387 Query 6810 TTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTG-CAGCTGGTCCGCTCCC 6868 | ||| | ||||||| ||| | || | ||| | ||| ||||||||| | ||| Sbjct 28386 GGCGGTCGTAAGGGTTCTCCTTTAGCTTGCGCACCAC-TTCTGCCAGCTGGTCGACACCC 28328 Query 6869 TGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCAAAGTGTCTCCACTGGAAC 6928 || || | ||||| || | || || | || || || |||||||||| ||||||||| Sbjct 28327 TGACCGGTGTAGTCTGCGTTGCGGTCCTGGTATTCGGCGCCAAAGTGTCGCCACTGGAAA 28268 Query 6929 CCGTAGACCGGGCCCAAGTCGCCCTCCTCCCG 6960 |||||||| ||||| | |||||| ||||| || Sbjct 28267 CCGTAGACGGGGCCGAGGTCGCCTTCCTCGCG 28236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448257026454480