Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Clohesyomyces_20aquaticus_20[genbank_20GCA_5F002105025.1_202017-04-
20] 761 sequences; 49,677,730 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq46 232 7e-56
seq412 138 1e-27
seq738 104 2e-17
seq11 102 8e-17
>seq46
Length=404262
Score = 232 bits (256), Expect = 7e-56
Identities = 225/286 (79%), Gaps = 5/286 (2%)
Strand=Plus/Plus
Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695
|| |||| |||||||| |||||||| || || || ||||||| ||| ||| | || ||
Sbjct 337182 ATCTGGCAAATGTACAAGAAGGCCGAAGCCTCTTTTTGGACCGCCGAAGAGATCGATCTC 337241
Query 116696 TCCAAGGACACGAGCGACTGGGA---GCGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752
||||| ||| ||||||| | ||| ||||||||| |||||||| ||||||
Sbjct 337242 TCCAAAGACCTCCACGACTGGAACAAGCGATTGAACGACGACGAGCGCTTCTTCATCTCC 337301
Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG- 116811
||||| || ||||| ||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 337302 CACGTCCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTCAACGAGAACCTGGTCGAGCGC 337361
Query 116812 TTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871
||| || | |||||||| ||| |||||||||| |||||||||||||| |||||| ||
Sbjct 337362 TTTAGCGGA-GAGGTGCAAGTGCCCGAGGCGCGATGCTTCTACGGCTTCCAGATCATGAT 337420
Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917
||||||| | |||||||||| || ||| | | ||||| || |||
Sbjct 337421 GGAGAACATCCACTCGGAAACATACTCGCTCTTGATCGATACCTAC 337466
Score = 170 bits (188), Expect = 2e-37
Identities = 315/454 (69%), Gaps = 16/454 (4%)
Strand=Plus/Plus
Query 116984 AAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTG 117043
|||||||| ||||| || || |||||| | | || | | | |||| | | |||||
Sbjct 337588 AAGGCCGACTGGGCTCTCCGGTGGATCTCAGACAAAAACTCGACCTTTGCGAACCGCCTC 337647
Query 117044 GTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGG 117103
|| |||||||| ||||| || ||| ||||||| || || ||||| |||| || |||
Sbjct 337648 GTTGCCTTCGCCGCCGTAGAAGGCATCTTCTTCTCCGGTTCCTTCGCGTCCATCTTCTGG 337707
Query 117104 CTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGAC 117163
| ||||| |||||||||||||||||||| || ||| |||||| ||||| || | |||
Sbjct 337708 TTGAAGAAGCGCGGCCTCATGCCCGGCCTCACCTTCTCCAACGAACTCATATCTCGTGAC 337767
Query 117164 GAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGC 117223
||||| |||| |||||| || || | || ||| | | || | || |
Sbjct 337768 GAGGGCATGCACACCGACTTCGCGTGCCTACTCTTCTCTCTCCT----CAACACACGTCC 337823
Query 117224 GCGGC----GCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCT 117279
| || | ||| || ||| ||||||| || ||| |||||||||| |||||
Sbjct 337824 GTCGCAAAAGGAAGTCGAGGCCATCATCACCGAAGCTGTCACCATCGAGCAAGAGTTCCT 337883
Query 117280 CACCGAAGCGCTGCCG-GTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACA 117338
||| ||||| || ||| |||| ||| || || | || | | | |||| || ||||
Sbjct 337884 CACAGAAGCTCTACCGTGTGC-TCTTCTCGGCATGAACTCCAAGCTCATGTGCCAGTACA 337942
Query 117339 TCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCC---AAGCACTACAACA 117395
||||||||||||||||| | ||||| || | ||| ||||| | ||| |||||||
Sbjct 337943 TCGAGTTCGTCGCCGACCGCCTGCT-CTTG-GCT-CTCGGCAACCAAAAGTTCTACAACG 337999
Query 117396 CGCCCAACCCGCTGGACTTTATGAACCTCATCTC 117429
| ||||||| | ||||| ||| | ||||||
Sbjct 338000 CCACCAACCCCTTCGACTTCATGGAGAACATCTC 338033
>seq412
Length=249799
Score = 138 bits (152), Expect = 1e-27
Identities = 155/205 (76%), Gaps = 2/205 (1%)
Strand=Plus/Minus
Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748
|||||| || ||||| || || || || ||||| || |||||| |||| || || | |
Sbjct 4527 AATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACTATCACCCTCGAGGTGGAGTCGTC 4468
Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807
||| | | | | |||| |||| |||||||| || || |||||||| ||| |||| |
Sbjct 4467 CGATACCATCGACAACG-TCAAATCAAAAATTCAGGATAAGGAGGGCATTCCCCCGGATC 4409
Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867
|||| || ||||||| ||| ||||| ||||| || || | |||||||| ||||||||
Sbjct 4408 AGCAGCGTCTCATCTTCGCCGGCAAGCAGCTTGAAGATGGCCGCACCCTGTCCGACTACA 4349
Query 40868 ACATCCAGAAGGAGGCCACGCTGCA 40892
|||||||||| ||| |||| || ||
Sbjct 4348 ACATCCAGAAAGAGTCCACCCTCCA 4324
Score = 118 bits (130), Expect = 1e-21
Identities = 150/204 (74%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || ||||| ||||| || ||||| | || || || | ||
Sbjct 4298 ATGCAGATCTTCGTCAAGACACTCACCGGCAAGACGATCACGCTAGAGGTTGAGTCGTCC 4239
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | |||| | ||| || || | || |||||||| || ||| |||||||
Sbjct 4238 GACACAATCGACAACG-TGAAGTCCAAGATCCAGGATAAAGAGGGTATTCCCCCGGACCA 4180
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
|||||| ||||||| || || || ||| |||| |||| || || ||| ||||||||
Sbjct 4179 GCAACGTCTCATCTTTGCTGGTAAGCAGTTGGAGGACGGCCGAACGCTCTCGGACTACAA 4120
Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892
||||||||||||| | || |||||
Sbjct 4119 CATCCAGAAGGAGTCGACTCTGCA 4096
Score = 116 bits (128), Expect = 4e-21
Identities = 140/188 (74%), Gaps = 2/188 (1%)
Strand=Plus/Minus
Query 40712 TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAG 40770
|||| || || ||||| ||| | || |||||| | | ||| | | | | |||| ||||
Sbjct 4732 TCACCGGTAAGACCATTACCCTTGAGGTCGAATCGAGCGATACCATCGACAACG-TCAAA 4674
Query 40771 GAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGC 40830
|| || | || || |||||||||||| | ||||| || ||| | |||| ||| |||
Sbjct 4673 TCGAAGATCCAGGATAAGGAGGGCATCCCCCCAGACCAACAGCGATTGATCTTCGCCGGC 4614
Query 40831 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTG 40890
|| ||||| || || | |||||||| |||||||||||| ||||||||| |||||||
Sbjct 4613 AAGCAGCTCGAGGATGGCCGCACCCTGTCCGACTACAACATTCAGAAGGAGTCCACGCTC 4554
Query 40891 CATCTAGT 40898
||||| ||
Sbjct 4553 CATCTCGT 4546
Score = 93.3 bits (102), Expect = 4e-14
Identities = 135/188 (72%), Gaps = 2/188 (1%)
Strand=Plus/Minus
Query 40712 TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACA-GCGTGCAAACGCTCAAG 40770
|||| ||||| ||||||||| | || || || || | |||| | || || | |||||
Sbjct 5015 TCACCGGCAAGACCATCACCTTGGAGGTGGAGTCCTCGGACACGATTGACAATG-TCAAG 4957
Query 40771 GAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGC 40830
|| || | || || || |||||||| | ||||| || || | || | ||| |||
Sbjct 4956 TCGAAGATCCAGGATAAGGAAGGCATCCCGCCTGACCAACAGCGCTTGATTTTCGCAGGC 4897
Query 40831 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTG 40890
|| ||||| || || | || || || |||||||||||||||||||||| | || |||
Sbjct 4896 AAGCAGCTCGAGGATGGACGTACTCTGTCCGACTACAACATCCAGAAGGAGTCAACTCTG 4837
Query 40891 CATCTAGT 40898
||||| ||
Sbjct 4836 CATCTCGT 4829
>seq738
Length=174967
Score = 104 bits (114), Expect = 2e-17
Identities = 99/127 (78%), Gaps = 0/127 (0%)
Strand=Plus/Minus
Query 40766 TCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACG 40825
||||| || |||| ||||| |||||||| ||| ||||||| || || | |||| ||
Sbjct 25379 TCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCCCCGGACCAACAGCGTTTGATCTTCG 25320
Query 40826 CGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCA 40885
| ||||| ||||| || || | |||||||| |||||||||||||||||||||| | |
Sbjct 25319 CCGGCAAGCAGCTCGAGGATGGCCGCACCCTTTCCGACTACAACATCCAGAAGGAGTCGA 25260
Query 40886 CGCTGCA 40892
| |||||
Sbjct 25259 CTCTGCA 25253
>seq11
Length=137347
Score = 102 bits (112), Expect = 8e-17
Identities = 92/116 (79%), Gaps = 0/116 (0%)
Strand=Plus/Minus
Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842
||||| |||||||| ||| | ||||| || || || |||| ||| || || ||||| ||
Sbjct 124847 GACAAGGAGGGCATTCCCCCAGACCAACAGCGTCTGATCTTCGCCGGAAAGCAGCTCGAA 124788
Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
|||| ||||||||| |||||||||||||||||||||| | || || || || ||
Sbjct 124787 GACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCGACCCTTCACCTCGT 124732
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515214298977360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |