Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clohesyomyces_20aquaticus_20[genbank_20GCA_5F002105025.1_202017-04- 20] 761 sequences; 49,677,730 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq46 232 7e-56 seq412 138 1e-27 seq738 104 2e-17 seq11 102 8e-17 >seq46 Length=404262 Score = 232 bits (256), Expect = 7e-56 Identities = 225/286 (79%), Gaps = 5/286 (2%) Strand=Plus/Plus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| |||||||| || || || ||||||| ||| ||| | || || Sbjct 337182 ATCTGGCAAATGTACAAGAAGGCCGAAGCCTCTTTTTGGACCGCCGAAGAGATCGATCTC 337241 Query 116696 TCCAAGGACACGAGCGACTGGGA---GCGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752 ||||| ||| ||||||| | ||| ||||||||| |||||||| |||||| Sbjct 337242 TCCAAAGACCTCCACGACTGGAACAAGCGATTGAACGACGACGAGCGCTTCTTCATCTCC 337301 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG- 116811 ||||| || ||||| ||||||||| ||||||||||||||||||||| ||||||||||| Sbjct 337302 CACGTCCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTCAACGAGAACCTGGTCGAGCGC 337361 Query 116812 TTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871 ||| || | |||||||| ||| |||||||||| |||||||||||||| |||||| || Sbjct 337362 TTTAGCGGA-GAGGTGCAAGTGCCCGAGGCGCGATGCTTCTACGGCTTCCAGATCATGAT 337420 Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917 ||||||| | |||||||||| || ||| | | ||||| || ||| Sbjct 337421 GGAGAACATCCACTCGGAAACATACTCGCTCTTGATCGATACCTAC 337466 Score = 170 bits (188), Expect = 2e-37 Identities = 315/454 (69%), Gaps = 16/454 (4%) Strand=Plus/Plus Query 116984 AAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTG 117043 |||||||| ||||| || || |||||| | | || | | | |||| | | ||||| Sbjct 337588 AAGGCCGACTGGGCTCTCCGGTGGATCTCAGACAAAAACTCGACCTTTGCGAACCGCCTC 337647 Query 117044 GTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGG 117103 || |||||||| ||||| || ||| ||||||| || || ||||| |||| || ||| Sbjct 337648 GTTGCCTTCGCCGCCGTAGAAGGCATCTTCTTCTCCGGTTCCTTCGCGTCCATCTTCTGG 337707 Query 117104 CTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGAC 117163 | ||||| |||||||||||||||||||| || ||| |||||| ||||| || | ||| Sbjct 337708 TTGAAGAAGCGCGGCCTCATGCCCGGCCTCACCTTCTCCAACGAACTCATATCTCGTGAC 337767 Query 117164 GAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGC 117223 ||||| |||| |||||| || || | || ||| | | || | || | Sbjct 337768 GAGGGCATGCACACCGACTTCGCGTGCCTACTCTTCTCTCTCCT----CAACACACGTCC 337823 Query 117224 GCGGC----GCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCT 117279 | || | ||| || ||| ||||||| || ||| |||||||||| ||||| Sbjct 337824 GTCGCAAAAGGAAGTCGAGGCCATCATCACCGAAGCTGTCACCATCGAGCAAGAGTTCCT 337883 Query 117280 CACCGAAGCGCTGCCG-GTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACA 117338 ||| ||||| || ||| |||| ||| || || | || | | | |||| || |||| Sbjct 337884 CACAGAAGCTCTACCGTGTGC-TCTTCTCGGCATGAACTCCAAGCTCATGTGCCAGTACA 337942 Query 117339 TCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCC---AAGCACTACAACA 117395 ||||||||||||||||| | ||||| || | ||| ||||| | ||| ||||||| Sbjct 337943 TCGAGTTCGTCGCCGACCGCCTGCT-CTTG-GCT-CTCGGCAACCAAAAGTTCTACAACG 337999 Query 117396 CGCCCAACCCGCTGGACTTTATGAACCTCATCTC 117429 | ||||||| | ||||| ||| | |||||| Sbjct 338000 CCACCAACCCCTTCGACTTCATGGAGAACATCTC 338033 >seq412 Length=249799 Score = 138 bits (152), Expect = 1e-27 Identities = 155/205 (76%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || ||||| || || || || ||||| || |||||| |||| || || | | Sbjct 4527 AATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACTATCACCCTCGAGGTGGAGTCGTC 4468 Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 ||| | | | | |||| |||| |||||||| || || |||||||| ||| |||| | Sbjct 4467 CGATACCATCGACAACG-TCAAATCAAAAATTCAGGATAAGGAGGGCATTCCCCCGGATC 4409 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| || ||||||| ||| ||||| ||||| || || | |||||||| |||||||| Sbjct 4408 AGCAGCGTCTCATCTTCGCCGGCAAGCAGCTTGAAGATGGCCGCACCCTGTCCGACTACA 4349 Query 40868 ACATCCAGAAGGAGGCCACGCTGCA 40892 |||||||||| ||| |||| || || Sbjct 4348 ACATCCAGAAAGAGTCCACCCTCCA 4324 Score = 118 bits (130), Expect = 1e-21 Identities = 150/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| || ||||| | || || || | || Sbjct 4298 ATGCAGATCTTCGTCAAGACACTCACCGGCAAGACGATCACGCTAGAGGTTGAGTCGTCC 4239 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | ||| || || | || |||||||| || ||| ||||||| Sbjct 4238 GACACAATCGACAACG-TGAAGTCCAAGATCCAGGATAAAGAGGGTATTCCCCCGGACCA 4180 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| ||||||| || || || ||| |||| |||| || || ||| |||||||| Sbjct 4179 GCAACGTCTCATCTTTGCTGGTAAGCAGTTGGAGGACGGCCGAACGCTCTCGGACTACAA 4120 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||||||| | || ||||| Sbjct 4119 CATCCAGAAGGAGTCGACTCTGCA 4096 Score = 116 bits (128), Expect = 4e-21 Identities = 140/188 (74%), Gaps = 2/188 (1%) Strand=Plus/Minus Query 40712 TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAG 40770 |||| || || ||||| ||| | || |||||| | | ||| | | | | |||| |||| Sbjct 4732 TCACCGGTAAGACCATTACCCTTGAGGTCGAATCGAGCGATACCATCGACAACG-TCAAA 4674 Query 40771 GAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGC 40830 || || | || || |||||||||||| | ||||| || ||| | |||| ||| ||| Sbjct 4673 TCGAAGATCCAGGATAAGGAGGGCATCCCCCCAGACCAACAGCGATTGATCTTCGCCGGC 4614 Query 40831 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTG 40890 || ||||| || || | |||||||| |||||||||||| ||||||||| ||||||| Sbjct 4613 AAGCAGCTCGAGGATGGCCGCACCCTGTCCGACTACAACATTCAGAAGGAGTCCACGCTC 4554 Query 40891 CATCTAGT 40898 ||||| || Sbjct 4553 CATCTCGT 4546 Score = 93.3 bits (102), Expect = 4e-14 Identities = 135/188 (72%), Gaps = 2/188 (1%) Strand=Plus/Minus Query 40712 TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACA-GCGTGCAAACGCTCAAG 40770 |||| ||||| ||||||||| | || || || || | |||| | || || | ||||| Sbjct 5015 TCACCGGCAAGACCATCACCTTGGAGGTGGAGTCCTCGGACACGATTGACAATG-TCAAG 4957 Query 40771 GAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGC 40830 || || | || || || |||||||| | ||||| || || | || | ||| ||| Sbjct 4956 TCGAAGATCCAGGATAAGGAAGGCATCCCGCCTGACCAACAGCGCTTGATTTTCGCAGGC 4897 Query 40831 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTG 40890 || ||||| || || | || || || |||||||||||||||||||||| | || ||| Sbjct 4896 AAGCAGCTCGAGGATGGACGTACTCTGTCCGACTACAACATCCAGAAGGAGTCAACTCTG 4837 Query 40891 CATCTAGT 40898 ||||| || Sbjct 4836 CATCTCGT 4829 >seq738 Length=174967 Score = 104 bits (114), Expect = 2e-17 Identities = 99/127 (78%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 40766 TCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACG 40825 ||||| || |||| ||||| |||||||| ||| ||||||| || || | |||| || Sbjct 25379 TCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCCCCGGACCAACAGCGTTTGATCTTCG 25320 Query 40826 CGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCA 40885 | ||||| ||||| || || | |||||||| |||||||||||||||||||||| | | Sbjct 25319 CCGGCAAGCAGCTCGAGGATGGCCGCACCCTTTCCGACTACAACATCCAGAAGGAGTCGA 25260 Query 40886 CGCTGCA 40892 | ||||| Sbjct 25259 CTCTGCA 25253 >seq11 Length=137347 Score = 102 bits (112), Expect = 8e-17 Identities = 92/116 (79%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| |||||||| ||| | ||||| || || || |||| ||| || || ||||| || Sbjct 124847 GACAAGGAGGGCATTCCCCCAGACCAACAGCGTCTGATCTTCGCCGGAAAGCAGCTCGAA 124788 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||| ||||||||| |||||||||||||||||||||| | || || || || || Sbjct 124787 GACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCGACCCTTCACCTCGT 124732 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515214298977360