Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clohesyomyces_20aquaticus_20[genbank_20GCA_5F002105025.1_202017-04- 20] 761 sequences; 49,677,730 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq412 152 4e-32 seq738 89.7 4e-13 seq11 86.0 5e-12 >seq412 Length=249799 Score = 152 bits (168), Expect = 4e-32 Identities = 159/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||||| || |||||||| || |||||||| ||| || ||||| ||| || Sbjct 4318 ACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCA 4377 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || ||| ||||||||||||||||||| || || ||||||||||| || | Sbjct 4378 AGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCCGGGGGAATGCCCTCCTTATCCTGA 4437 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 |||||| ||| || | |||| ||| || | ||| ||||||| ||| | || ||| Sbjct 4438 ATTTTTGATTTGACGTTGTCGATGGTATCGGACGACTCCACCTCGAGGGTGATAGTCTTG 4497 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||||| || || || || |||||||| Sbjct 4498 CCGGTCAGGGTCTTGACGAAGATCTGCAT 4526 Score = 86.0 bits (94), Expect = 5e-12 Identities = 129/182 (71%), Gaps = 6/182 (3%) Strand=Plus/Plus Query 118536 TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGT 118595 |||| || ||||| || ||||||||||| ||| || ||||| |||||||||||| Sbjct 4552 TGGAGCGTGGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCATCCTCGAGCTGC 4611 Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTT 118655 || || ||| |||| | ||||| || || || || ||||||||||| || || || Sbjct 4612 TTGCCGGCGAAGATCAATCGCTGTTGGTCTGGGGGGATGCCCTCCTTATCCTGGATCTTC 4671 Query 118656 TGTTTAACCTGTTCGACGGTGTCCGTGCTC---TCGACCTCGACGGTCACCGTTTTGCCG 118712 ||| || | |||| ||| || |||| |||||||| | ||| | || || ||| Sbjct 4672 GATTTGACGTTGTCGATGGTATC---GCTCGATTCGACCTCAAGGGTAATGGTCTTACCG 4728 Query 118713 GT 118714 || Sbjct 4729 GT 4730 >seq738 Length=174967 Score = 89.7 bits (98), Expect = 4e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||| | || ||||| || || |||||||| ||| | ||||| |||||| Sbjct 25246 CACCAAGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTC 25305 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 |||||| || || ||| |||| | |||||| || || || || |||||||||||||| Sbjct 25306 GAGCTGCTTGCCGGCGAAGATCAAACGCTGTTGGTCCGGGGGAATGCCCTCCTTGTC 25362 >seq11 Length=137347 Score = 86.0 bits (94), Expect = 5e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || || |||||||| ||| | ||||| || |||||||| ||||| Sbjct 124744 GTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCTTCGAGCTGCTTTCCG 124803 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||| |||| |||||||| || || || || ||||||||||||||||| Sbjct 124804 GCGAAGATCAGACGCTGTTGGTCTGGGGGAATGCCCTCCTTGTCTGT 124850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433826376358612