Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clohesyomyces_20aquaticus_20[genbank_20GCA_5F002105025.1_202017-04- 20] 761 sequences; 49,677,730 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq412 125 5e-24 >seq412 Length=249799 Score = 125 bits (138), Expect = 5e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | ||| |||| ||| | || |||||||| ||||||||||||||| Sbjct 4300 CCACCTCGCAGACGCAGAACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAC 4359 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || || | ||||||||| ||||| ||||| |||||||| || ||| Sbjct 4360 AGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCCGGGGGA 4419 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || |||||| || || ||||| ||| | | | | || | ||||| ||| || || Sbjct 4420 ATGCCCTCCTTATCCTGAAT-TTTTGATTTGACGTTGTCGATGGTATCGGACGACTCCAC 4478 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||| || |||||||| || || || || ||||||||||| Sbjct 4479 CTCGAGGGTGATAGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 4526 Score = 122 bits (134), Expect = 6e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| || || | ||||||| ||| | ||| || ||||| ||||||||||| || Sbjct 4072 CCGCCACGGAGACGGAGCACCAAGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAG 4131 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| ||| |||| ||||||||||| || || || ||||| || |||||||| ||| Sbjct 4132 AGCGTTCGGCCGTCCTCCAACTGCTTACCAGCAAAGATGAGACGTTGCTGGTCCGGGGGA 4191 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||| || || ||||| ||| | | | | || | |||| ||| || || Sbjct 4192 ATACCCTCTTTATCCTGGATCTTGGACTTCACGTTGTCGATTGTGTCGGACGACTCAACC 4251 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||| || ||||||||||| || || || ||||||||||| Sbjct 4252 TCTAGCGTGATCGTCTTGCCGGTGAGTGTCTTGACGAAGATCTGCAT 4298 Score = 98.7 bits (108), Expect = 6e-16 Identities = 147/206 (71%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| || | || || || || | ||| || ||||| ||||||||||||||| Sbjct 4811 CCACCGCGGAGACGAAGGACGAGATGCAGAGTTGACTCCTTCTGGATGTTGTAGTCGGAC 4870 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGG 34281 || ||| | || || | |||||||||||||||||| | ||||| ||||| | |||| Sbjct 4871 AGAGTACGTCCATCCTCGAGCTGCTTGCCTGCGAAAATCAAGCGCTGTTGGTCAGGCGGG 4930 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||||| || ||||| ||| | || | | |||| || | || || || Sbjct 4931 -ATGCCTTCCTTATCCTGGATCTTCGACTTGACATTGTCAATCGTGTCCGAGGACTCCAC 4989 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGA 34367 |||| |||||||| |||||||||| Sbjct 4990 CTCCAAGGTGATGGTCTTGCCGGTGA 5015 Score = 89.7 bits (98), Expect = 3e-13 Identities = 121/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||||||||| ||| | || || | ||||||||| ||||| Sbjct 4564 TCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAG 4623 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || | ||||| ||||| ||| | || |||||| || ||||| || | | | Sbjct 4624 ATCAATCGCTGTTGGTCTGGGGGGATGCCCTCCTTATCCTGGATCTTCGATTTGACGTTG 4683 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGA 34367 | || | |||| |||||||||| || | || ||||| || ||||||| Sbjct 4684 TCGATGGTATCGCTCGATTCGACCTCAAGGGTAATGGTCTTACCGGTGA 4732 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323069003608160