Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Clohesyomyces_20aquaticus_20[genbank_20GCA_5F002105025.1_202017-04-
20] 761 sequences; 49,677,730 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq634 378 6e-100
seq46 149 6e-31
seq412 111 1e-19
>seq634
Length=211807
Score = 378 bits (418), Expect = 6e-100
Identities = 666/962 (69%), Gaps = 14/962 (1%)
Strand=Plus/Plus
Query 23026 CGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACA 23085
|||||| | ||||| ||||| ||||| || | |||||||| | || ||||| ||
Sbjct 37124 CGAGGCCAAGTTGCAGACGGCAACCTCATCGGGTGCGGTGTACTCAATGATCTCGGTGCA 37183
Query 23086 TAGATT---GCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGA 23142
|| || ||| | || || || | || ||||||||||||| || ||||| |
Sbjct 37184 GAGGTTAGAGCTGCGA---ATAGTTCCGAGGTTCTTCTGGTTGCTTTTGCGGTTGCATGC 37240
Query 23143 ATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCA 23202
||||||||||||||| ||||| | || |||||| ||| | ||||| ||| || |||
Sbjct 37241 ATCCTTGTAGAGCATATACGGGTTTCCAGTCTCGGTCTGGGCCTCGAGGATGGCGTACCA 37300
Query 23203 CATAGTCTGAGCGTGAACACGTCGCACGTACCTG-CCTTCTTCCTCGTACTTTTGGTACA 23261
| |||| ||| | ||| ||| | ||| | | || || |||| ||||| || ||||
Sbjct 37301 GAGCTTCTGGGCGCGCACA-GTCTCTCGTCCGCGTCCCTCGGCCTCATACTTGTGATACA 37359
Query 23262 ACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGA 23321
| | || || ||| | || || |||||||| || || | || |||| || | |
Sbjct 37360 GCTCCTCGAACTCGTCGCCATAGACGTCGGCCAACCCAGGGGCTTCGTTCGGGCAGAAAA 37419
Query 23322 GACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGT 23381
|| ||||| | | || | || || |||| || || || || ||||| |||||||
Sbjct 37420 GAGTCCACTCTCCATTATCCTGGACCCGCTTCATGAAGAGGTCAGGAATCCACAGAGCGT 37479
Query 23382 AGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGT 23441
|||||| || |||||||| | ||| || ||||| |||||| | ||| | |||
Sbjct 37480 AGAACAAATCACGGGCGCGGATCTCTTCCTTGCCATGGTTCTTGCGAAGATCAAGGAAGC 37539
Query 23442 CCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGC 23501
| || || || || ||||| ||||||||||| | ||| || || || || | ||||||||
Sbjct 37540 CAAAGACATCGGCGTGCCATGGCTCGAGGTAGATGGCGAAAGCACCTGGGCGCTTATTGC 37599
Query 23502 CGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGT 23561
| ||||| ||||| ||||| || |||||||| || || | ||||| || | ||| ||||
Sbjct 37600 CACCCTGGTCGACATAACGAGCGGTGTTGTTATAGACACGAAGCATAGGGATGAGGCCGT 37659
Query 23562 TGGACGCGCCGCCTACG--CCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTG 23619
|||||| ||| | || || | | || || | || || | | ||||| |
Sbjct 37660 TGGACGTTCCG--TTCGTTCCACCGATGTATGAGCCGGTGGCACGGATGCGATGAACATT 37717
Query 23620 GAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGAT 23679
|| ||| || || || | | || || ||||| ||||| ||||| |||||||||||
Sbjct 37718 GAGACCAATACCGCCAGCGGTCTTGGAGATCATAGCGCACGTCTTCAGCGTGTCGTAGAT 37777
Query 23680 GCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGG 23739
||| ||||||||||| || ||| | ||| | ||| || || ||||| || | |||||
Sbjct 37778 GCCTTCGATGCTGTCATCCTTGATATCGATGAGGAAGCAGGAGGACATCTGTGGGTTGGG 37837
Query 23740 CGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACAT-TAGAT 23798
|| |||| ||| || || || ||||| || |||||| || ||||| ||| |
Sbjct 37838 TGTTCCGGCGTTGAAAAGCGTTGGAGACGCGTGTGTGAAGTATTTGTTGGACATGTAG-T 37896
Query 23799 TGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCA 23858
|||| || |||||||| || ||||| || ||||| || || | ||| || ||||| |
Sbjct 37897 TGTATGTCTCGATGGCCTTCTCGATGTCTTCGCCGTGGATGCCAACGGCTACACGCATGA 37956
Query 23859 TCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCA 23918
||||| ||| || | ||| | | |||||| || || |||||||| |||| ||
Sbjct 37957 GCATGTGTTGTGGACGCTCAGCAATCTTGCCGTTTATGCGGAGGAGATATGAGCGTTCCA 38016
Query 23919 TCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATTCA 23978
|| ||||| ||||| | | ||||| ||||| ||||||| ||| || || || ||||
Sbjct 38017 GGGTCTTAAAGCCAAAGAACTGGTAGTTGAAGTCGCGATCGTACACGATAGCAGAGTTCA 38076
Query 23979 AA 23980
||
Sbjct 38077 AA 38078
Score = 179 bits (198), Expect = 3e-40
Identities = 396/583 (68%), Gaps = 17/583 (3%)
Strand=Plus/Plus
Query 22145 GTGCGAAGATAATACATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGAC 22204
|| || || || || | ||| ||||| ||||| | |||||| || || || |||||
Sbjct 36243 GTTCGGAGGTAGTAGAGGCCGGTCTTGAGACCAAGCTTCCATCCGGCGAAGTGCATCGAT 36302
Query 22205 GTCAATTTT--CCATAACTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGA 22262
|| ||| || |||| | ||| | ||||| | |||| |||||| ||||||||
Sbjct 36303 GT-AATCTTGCCCATGG-TAGGCTCCTTCATGTGAATGTTGAGCGACTGGGACTGATCGA 36360
Query 22263 TAAACGCTCCTCGATCGGCGGCCATATTTATCAATGTACGCATCGACATTTCCCATACGG 22322
| || || || || || |||||||| | || | |||||| || |||||||| ||||
Sbjct 36361 TGAAGGCGCCACGGTCAGCGGCCATCTGAATGATGGTACGCTGGGAGATTTCCCACACGG 36420
Query 22323 TCTTGTACAGTTGCCTGATCTCTAACGGTATCGATTCG-ATCCTCTGGACGGACCCGTTA 22381
||||||| || | |||| || | ||| | | | | |||||||||| ||| || |
Sbjct 36421 TCTTGTATAGCGCCTTGATTTC-ATCGGGAATGTTAGGAATCCTCTGGATGGAACCACCA 36479
Query 22382 TTGTGTATGATCAAATTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTG 22441
| | ||||| || || || | || ||||| || ||| | |||||| ||
Sbjct 36480 TCGGCGATGATGCGGTTCTTCATGTTGTCAGACCACAGGCCCATGTCAACCAAATCCTTC 36539
Query 22442 ACCAGATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTG 22501
| || |||| || || || |||||||||| ||| || ||||| ||| ||||||
Sbjct 36540 AGGAGCCAGGGGTTGACGACCTGGAACTCGCCGGCCAAAACACGGCGGGAGTAGATGTTG 36599
Query 22502 GATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGC 22561
|| || | |||||||| ||||||||| || || || || | || || || || |||
Sbjct 36600 GAGGTATATGGTTCGAAGCATTCATTGTAGCCAAGAATTTGGGATGTGGAGGCAGTAGGC 36659
Query 22562 ATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTT--GAGCA 22619
|| || || | || |||||||| | | || |||| || || || ||| |||||
Sbjct 36660 ATGGGGGCAACAAGCAGCGAGTTGCGAACACCATGCTGTGCGATCTTTGCCTTGAGAGCA 36719
Query 22620 TCGACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGC 22679
|| ||||||||| || |||| ||||| | ||| ||||||||| ||||| | | ||
Sbjct 36720 TC--CCAGTCCCAGAGGTCGGTGGGCGTGATATT---CCACATATCATATTGAAGTATGC 36774
Query 22680 C--GCGACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACCA 22720
| |||| | || ||| ||||| ||||| || ||||||
Sbjct 36775 CCTGCGA--GACAGGAGAGCCCTCGTAAGTTTCATATGGACCA 36815
>seq46
Length=404262
Score = 149 bits (164), Expect = 6e-31
Identities = 221/312 (71%), Gaps = 6/312 (2%)
Strand=Plus/Plus
Query 57981 GCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATG 58040
|| ||||||||||| ||||| || ||||| || || ||| ||| | || || ||| ||
Sbjct 337651 GCCTTCGCCGCCGTAGAAGGCATCTTCTTCTCCGGTTCCTTCGCGTCCATCTTCTGGTTG 337710
Query 58041 AAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAG 58100
||||| |||||||| ||||||||||| || || |||||| | ||||| || ||||||
Sbjct 337711 AAGAAGCGCGGCCTCATGCCCGGCCTCACCTTCTCCAACGAACTCATATCTCGTGACGAG 337770
Query 58101 GGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAA---CCGACG 58157
|| | || || || || ||||||||| | | ||||| | |||| | | ||| ||
Sbjct 337771 GGCATGCACACCGACTTCGCGTGCCTACTCTTCTCTC---TCCTCAACACACGTCCGTCG 337827
Query 58158 CGGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACC 58217
| | || || ||| |||||||| || ||| | ||||| | ||||| ||||
Sbjct 337828 CAAAAGGAAGTCGAGGCCATCATCACCGAAGCTGTCACCATCGAGCAAGAGTTCCTCACA 337887
Query 58218 GAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAG 58277
||||| |||||| || | ||||| |||||| | | |||| ||||||| |||
Sbjct 337888 GAAGCTCTACCGTGTGCTCTTCTCGGCATGAACTCCAAGCTCATGTGCCAGTACATCGAG 337947
Query 58278 TTTGTTGCCGAC 58289
|| || ||||||
Sbjct 337948 TTCGTCGCCGAC 337959
>seq412
Length=249799
Score = 111 bits (122), Expect = 1e-19
Identities = 162/229 (71%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || ||||| ||||| ||||| ||||| || |||||| |||| || || |||||
Sbjct 4526 ATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACTATCACCCTCGAGGTGGAGTCGTCC 4467
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|| | |||| | |||||| | ||| ||| ||||| ||| | || || || |||
Sbjct 4466 GATACCATCGACAACGTCAAATCAAAAATTCAGGATAAGGAGGGCATTCCCCCGGATCAG 4407
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
|||||||| || ||||| ||||| ||| | ||||| || || ||| || |||
Sbjct 4406 CAGCGTCTCATCTTCGCCGGCAAGCAGCTTGAAGATGGCCGCACCCTGTCCGACTACAAC 4347
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
|| || ||||| || || || || |||| || | ||| | || ||||
Sbjct 4346 ATCCAGAAAGAGTCCACCCTCCACTTGGTTCTGCGTCTGCGAGGTGGTA 4298
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445762159647120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |