Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clohesyomyces_20aquaticus_20[genbank_20GCA_5F002105025.1_202017-04- 20] 761 sequences; 49,677,730 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq634 378 6e-100 seq46 149 6e-31 seq412 111 1e-19 >seq634 Length=211807 Score = 378 bits (418), Expect = 6e-100 Identities = 666/962 (69%), Gaps = 14/962 (1%) Strand=Plus/Plus Query 23026 CGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACA 23085 |||||| | ||||| ||||| ||||| || | |||||||| | || ||||| || Sbjct 37124 CGAGGCCAAGTTGCAGACGGCAACCTCATCGGGTGCGGTGTACTCAATGATCTCGGTGCA 37183 Query 23086 TAGATT---GCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGA 23142 || || ||| | || || || | || ||||||||||||| || ||||| | Sbjct 37184 GAGGTTAGAGCTGCGA---ATAGTTCCGAGGTTCTTCTGGTTGCTTTTGCGGTTGCATGC 37240 Query 23143 ATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCA 23202 ||||||||||||||| ||||| | || |||||| ||| | ||||| ||| || ||| Sbjct 37241 ATCCTTGTAGAGCATATACGGGTTTCCAGTCTCGGTCTGGGCCTCGAGGATGGCGTACCA 37300 Query 23203 CATAGTCTGAGCGTGAACACGTCGCACGTACCTG-CCTTCTTCCTCGTACTTTTGGTACA 23261 | |||| ||| | ||| ||| | ||| | | || || |||| ||||| || |||| Sbjct 37301 GAGCTTCTGGGCGCGCACA-GTCTCTCGTCCGCGTCCCTCGGCCTCATACTTGTGATACA 37359 Query 23262 ACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGA 23321 | | || || ||| | || || |||||||| || || | || |||| || | | Sbjct 37360 GCTCCTCGAACTCGTCGCCATAGACGTCGGCCAACCCAGGGGCTTCGTTCGGGCAGAAAA 37419 Query 23322 GACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGT 23381 || ||||| | | || | || || |||| || || || || ||||| ||||||| Sbjct 37420 GAGTCCACTCTCCATTATCCTGGACCCGCTTCATGAAGAGGTCAGGAATCCACAGAGCGT 37479 Query 23382 AGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGT 23441 |||||| || |||||||| | ||| || ||||| |||||| | ||| | ||| Sbjct 37480 AGAACAAATCACGGGCGCGGATCTCTTCCTTGCCATGGTTCTTGCGAAGATCAAGGAAGC 37539 Query 23442 CCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGC 23501 | || || || || ||||| ||||||||||| | ||| || || || || | |||||||| Sbjct 37540 CAAAGACATCGGCGTGCCATGGCTCGAGGTAGATGGCGAAAGCACCTGGGCGCTTATTGC 37599 Query 23502 CGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGT 23561 | ||||| ||||| ||||| || |||||||| || || | ||||| || | ||| |||| Sbjct 37600 CACCCTGGTCGACATAACGAGCGGTGTTGTTATAGACACGAAGCATAGGGATGAGGCCGT 37659 Query 23562 TGGACGCGCCGCCTACG--CCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTG 23619 |||||| ||| | || || | | || || | || || | | ||||| | Sbjct 37660 TGGACGTTCCG--TTCGTTCCACCGATGTATGAGCCGGTGGCACGGATGCGATGAACATT 37717 Query 23620 GAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGAT 23679 || ||| || || || | | || || ||||| ||||| ||||| ||||||||||| Sbjct 37718 GAGACCAATACCGCCAGCGGTCTTGGAGATCATAGCGCACGTCTTCAGCGTGTCGTAGAT 37777 Query 23680 GCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGG 23739 ||| ||||||||||| || ||| | ||| | ||| || || ||||| || | ||||| Sbjct 37778 GCCTTCGATGCTGTCATCCTTGATATCGATGAGGAAGCAGGAGGACATCTGTGGGTTGGG 37837 Query 23740 CGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACAT-TAGAT 23798 || |||| ||| || || || ||||| || |||||| || ||||| ||| | Sbjct 37838 TGTTCCGGCGTTGAAAAGCGTTGGAGACGCGTGTGTGAAGTATTTGTTGGACATGTAG-T 37896 Query 23799 TGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCA 23858 |||| || |||||||| || ||||| || ||||| || || | ||| || ||||| | Sbjct 37897 TGTATGTCTCGATGGCCTTCTCGATGTCTTCGCCGTGGATGCCAACGGCTACACGCATGA 37956 Query 23859 TCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCA 23918 ||||| ||| || | ||| | | |||||| || || |||||||| |||| || Sbjct 37957 GCATGTGTTGTGGACGCTCAGCAATCTTGCCGTTTATGCGGAGGAGATATGAGCGTTCCA 38016 Query 23919 TCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATTCA 23978 || ||||| ||||| | | ||||| ||||| ||||||| ||| || || || |||| Sbjct 38017 GGGTCTTAAAGCCAAAGAACTGGTAGTTGAAGTCGCGATCGTACACGATAGCAGAGTTCA 38076 Query 23979 AA 23980 || Sbjct 38077 AA 38078 Score = 179 bits (198), Expect = 3e-40 Identities = 396/583 (68%), Gaps = 17/583 (3%) Strand=Plus/Plus Query 22145 GTGCGAAGATAATACATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGAC 22204 || || || || || | ||| ||||| ||||| | |||||| || || || ||||| Sbjct 36243 GTTCGGAGGTAGTAGAGGCCGGTCTTGAGACCAAGCTTCCATCCGGCGAAGTGCATCGAT 36302 Query 22205 GTCAATTTT--CCATAACTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGA 22262 || ||| || |||| | ||| | ||||| | |||| |||||| |||||||| Sbjct 36303 GT-AATCTTGCCCATGG-TAGGCTCCTTCATGTGAATGTTGAGCGACTGGGACTGATCGA 36360 Query 22263 TAAACGCTCCTCGATCGGCGGCCATATTTATCAATGTACGCATCGACATTTCCCATACGG 22322 | || || || || || |||||||| | || | |||||| || |||||||| |||| Sbjct 36361 TGAAGGCGCCACGGTCAGCGGCCATCTGAATGATGGTACGCTGGGAGATTTCCCACACGG 36420 Query 22323 TCTTGTACAGTTGCCTGATCTCTAACGGTATCGATTCG-ATCCTCTGGACGGACCCGTTA 22381 ||||||| || | |||| || | ||| | | | | |||||||||| ||| || | Sbjct 36421 TCTTGTATAGCGCCTTGATTTC-ATCGGGAATGTTAGGAATCCTCTGGATGGAACCACCA 36479 Query 22382 TTGTGTATGATCAAATTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTG 22441 | | ||||| || || || | || ||||| || ||| | |||||| || Sbjct 36480 TCGGCGATGATGCGGTTCTTCATGTTGTCAGACCACAGGCCCATGTCAACCAAATCCTTC 36539 Query 22442 ACCAGATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTG 22501 | || |||| || || || |||||||||| ||| || ||||| ||| |||||| Sbjct 36540 AGGAGCCAGGGGTTGACGACCTGGAACTCGCCGGCCAAAACACGGCGGGAGTAGATGTTG 36599 Query 22502 GATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGC 22561 || || | |||||||| ||||||||| || || || || | || || || || ||| Sbjct 36600 GAGGTATATGGTTCGAAGCATTCATTGTAGCCAAGAATTTGGGATGTGGAGGCAGTAGGC 36659 Query 22562 ATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTT--GAGCA 22619 || || || | || |||||||| | | || |||| || || || ||| ||||| Sbjct 36660 ATGGGGGCAACAAGCAGCGAGTTGCGAACACCATGCTGTGCGATCTTTGCCTTGAGAGCA 36719 Query 22620 TCGACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGC 22679 || ||||||||| || |||| ||||| | ||| ||||||||| ||||| | | || Sbjct 36720 TC--CCAGTCCCAGAGGTCGGTGGGCGTGATATT---CCACATATCATATTGAAGTATGC 36774 Query 22680 C--GCGACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACCA 22720 | |||| | || ||| ||||| ||||| || |||||| Sbjct 36775 CCTGCGA--GACAGGAGAGCCCTCGTAAGTTTCATATGGACCA 36815 >seq46 Length=404262 Score = 149 bits (164), Expect = 6e-31 Identities = 221/312 (71%), Gaps = 6/312 (2%) Strand=Plus/Plus Query 57981 GCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATG 58040 || ||||||||||| ||||| || ||||| || || ||| ||| | || || ||| || Sbjct 337651 GCCTTCGCCGCCGTAGAAGGCATCTTCTTCTCCGGTTCCTTCGCGTCCATCTTCTGGTTG 337710 Query 58041 AAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAG 58100 ||||| |||||||| ||||||||||| || || |||||| | ||||| || |||||| Sbjct 337711 AAGAAGCGCGGCCTCATGCCCGGCCTCACCTTCTCCAACGAACTCATATCTCGTGACGAG 337770 Query 58101 GGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAA---CCGACG 58157 || | || || || || ||||||||| | | ||||| | |||| | | ||| || Sbjct 337771 GGCATGCACACCGACTTCGCGTGCCTACTCTTCTCTC---TCCTCAACACACGTCCGTCG 337827 Query 58158 CGGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACC 58217 | | || || ||| |||||||| || ||| | ||||| | ||||| |||| Sbjct 337828 CAAAAGGAAGTCGAGGCCATCATCACCGAAGCTGTCACCATCGAGCAAGAGTTCCTCACA 337887 Query 58218 GAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAG 58277 ||||| |||||| || | ||||| |||||| | | |||| ||||||| ||| Sbjct 337888 GAAGCTCTACCGTGTGCTCTTCTCGGCATGAACTCCAAGCTCATGTGCCAGTACATCGAG 337947 Query 58278 TTTGTTGCCGAC 58289 || || |||||| Sbjct 337948 TTCGTCGCCGAC 337959 >seq412 Length=249799 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| ||||| ||||| || |||||| |||| || || ||||| Sbjct 4526 ATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACTATCACCCTCGAGGTGGAGTCGTCC 4467 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| | |||||| | ||| ||| ||||| ||| | || || || ||| Sbjct 4466 GATACCATCGACAACGTCAAATCAAAAATTCAGGATAAGGAGGGCATTCCCCCGGATCAG 4407 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || ||||| ||||| ||| | ||||| || || ||| || ||| Sbjct 4406 CAGCGTCTCATCTTCGCCGGCAAGCAGCTTGAAGATGGCCGCACCCTGTCCGACTACAAC 4347 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || ||||| || || || || |||| || | ||| | || |||| Sbjct 4346 ATCCAGAAAGAGTCCACCCTCCACTTGGTTCTGCGTCTGCGAGGTGGTA 4298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445762159647120