Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Clohesyomyces_20aquaticus_20[genbank_20GCA_5F002105025.1_202017-04-
20] 761 sequences; 49,677,730 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq634 201 1e-46
>seq634
Length=211807
Score = 201 bits (222), Expect = 1e-46
Identities = 598/907 (66%), Gaps = 28/907 (3%)
Strand=Plus/Plus
Query 63189 TCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGAC 63248
||||||||||| || | || | | |||| | ||| ||| | ||| || | | | |
Sbjct 37365 TCGAACTCGTCGCCATAGACGTCGGCCAACCCAGGGGCTTCGTTCGGGCAGAAAAGAGTC 37424
Query 63249 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 63308
|||||||| | ||||| || || ||||| ||||| ||||||||||| ||||| ||
Sbjct 37425 CACTCTCCATTATCCTGGACCCGCTTCATGAAGAGGTCAGGAATCCACAGAGCGTAGAAC 37484
Query 63309 AGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 63368
| ||| | | | || || || || ||||| |||||| ||||| |||| |
Sbjct 37485 AAATCACGGGCGCGGATCTCTTCCTTGCCATGGTTCTTGCGAAGATCAAGGAA-GCCAAA 37543
Query 63369 -ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63427
| ||| | ||||| || || | ||| ||||| | | | || || || || || || ||
Sbjct 37544 GACATCGGCGTGCCATGGCTCGAGGTAGATGGCGAAAGCACCTGGGCGCTTATTGCCACC 37603
Query 63428 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGA 63487
||| || | || | ||||||||| ||||| || | | ||| || || | ||||| ||
Sbjct 37604 CTGGTCGACATAACGAGCGGTGTTGTTATAGACACGAAGCATAGGGATGAGGCCGTTGGA 37663
Query 63488 TATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAA--TTGATAGA 63545
| || || || || ||| || || ||||||| || | || |||| ||
Sbjct 37664 CGTTCCGTTCGTTCCACCGATGTATGAGCCGGTGGCACGGATGCGATGAACATTGA--GA 37721
Query 63546 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA-CGTGTCATAGATGCC 63604
|| || || || || | || ||||| | ||||| ||| || | |||||| ||||||||
Sbjct 37722 CCAATACCGCCAGCGGTCTTGGAGATCATAGCGCA-CGTCTTCAGCGTGTCGTAGATGCC 37780
Query 63605 TTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTG-GTGACGAGTAG 63663
||| ||||| ||||| | || | | || || ||| ||||| || | | | || |
Sbjct 37781 TTCGATGCTGTCATCCTTGATATCGATGAGGAAGCAGGAGGACATCTGTGGGTTGGGT-G 37839
Query 63664 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGA-AAGTAGATTG 63722
|||| || || || | || ||||| ||||| || || |||| | || | |||| |||
Sbjct 37840 TTCCGGCGTTGAAAAGCGTTGGAGACGCGTGTGTGAAGTATTTGTTGGACATGTAG-TTG 37898
Query 63723 TACGTCTCAATAGCTGAGTCTATATC----CCATTGATGAATTCCTACTGCGACACGCAT 63778
|| ||||| || || || || || || | |||| || || || ||||||||
Sbjct 37899 TATGTCTCGATGGCCTTCTCGATGTCTTCGCCGTGGATG----CCAACGGCTACACGCAT 37954
Query 63779 TAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTC 63838
| |||||| || || | ||| |||| ||| |||||| | | || || |||
Sbjct 37955 GAGCATGTGTTGTGGACGCTCAGCAATCTTGCCGTTTATGCGGAGGAGATATGAGCGTTC 38014
Query 63839 CAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATT 63898
|| || ||||| ||||| | | ||| ||||| || ||||| | ||| | || ||
Sbjct 38015 CAGGGTCTTAAAGCCAAAGAACTGGTAGTTGAAGTCGCGATCGTACACGATAGCAGAGTT 38074
Query 63899 GAGCTTATCCTTATATTTGTTAACTATATCCATGGTA---ATACT-TGAAATAATCGGAG 63954
| | |||| | | | || || || ||| | ||| ||||| |||||
Sbjct 38075 CAAATCATCCGCGTTCCTTATGACGATGTC----GTACACAGACTCGGAAATCATCGGCT 38130
Query 63955 AATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATA 64014
||||||||| || || || || | ||||| || |||| | |||| || |||
Sbjct 38131 GATGTTTCCCGTTCTTGGGGTTGATATAGTCATGTAGGTCCTTGACCACTGCAGAGAATT 38190
Query 64015 GtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCATAAT 64074
| || || || | |||||| |||||||| | ||| || | ||||| |||||||| ||||
Sbjct 38191 GCTTCTTGGTCTGCTTGTGAAGATTTGAAACGGCGATGCGAGCGGCAAGAATGGCGTAAT 38250
Query 64075 CCGGATG 64081
| || ||
Sbjct 38251 CTGGGTG 38257
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629811608860080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |