Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clohesyomyces_20aquaticus_20[genbank_20GCA_5F002105025.1_202017-04- 20] 761 sequences; 49,677,730 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq634 201 1e-46 >seq634 Length=211807 Score = 201 bits (222), Expect = 1e-46 Identities = 598/907 (66%), Gaps = 28/907 (3%) Strand=Plus/Plus Query 65982 TCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGAC 66041 ||||||||||| || | || | | |||| ||||| ||| | ||| || | | | | Sbjct 37365 TCGAACTCGTCGCCATAGACGTCGGCCAACCCAGGGGCTTCGTTCGGGCAGAAAAGAGTC 37424 Query 66042 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 66101 |||||||| | ||||| || || ||||| ||||| ||||||||||| ||||| || Sbjct 37425 CACTCTCCATTATCCTGGACCCGCTTCATGAAGAGGTCAGGAATCCACAGAGCGTAGAAC 37484 Query 66102 AAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 66161 ||||| | || | || || || || ||||| |||||| ||||| |||| | Sbjct 37485 AAATCACGGGCGCGGATCTCTTCCTTGCCATGGTTCTTGCGAAGATCAAGGAA-GCCAAA 37543 Query 66162 -ATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 66220 | ||| ||||| || || | ||| ||||| | | | || || || || || || || Sbjct 37544 GACATCGGCGTGCCATGGCTCGAGGTAGATGGCGAAAGCACCTGGGCGCTTATTGCCACC 37603 Query 66221 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 66280 ||| || | || | ||||||||| ||||| || | | ||| || || | || ||||| Sbjct 37604 CTGGTCGACATAACGAGCGGTGTTGTTATAGACACGAAGCATAGGGATGAGGCCGTTGGA 37663 Query 66281 TGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTA--ATTGATAGA 66338 || || || || || ||| || || | ||||| || | | |||| ||| Sbjct 37664 CGTTCCGTTCGTTCCACCGATGTATGAGCCGGTGGCACGGATGCGATGAACATTG--AGA 37721 Query 66339 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGT-TTTAACGTATCATAGATGCC 66397 || || || || || | || ||||| | ||||| ||| || | ||| || |||||||| Sbjct 37722 CCAATACCGCCAGCGGTCTTGGAGATCATAGCGCA-CGTCTTCAGCGTGTCGTAGATGCC 37780 Query 66398 CTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTG-GTGACGACTAG 66456 || || || |||||| | || | | || || ||| ||||| || | | | | | Sbjct 37781 TTCGATGCTGTCATCCTTGATATCGATGAGGAAGCAGGAGGACATCTGTGGGTTGGGT-G 37839 Query 66457 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGA-AAGTAGATTG 66515 |||| || || || | || ||||| ||||| || || |||| | || | |||| ||| Sbjct 37840 TTCCGGCGTTGAAAAGCGTTGGAGACGCGTGTGTGAAGTATTTGTTGGACATGTAG-TTG 37898 Query 66516 TACGTCTCAATAGCTGAGTCTATATC----CCATTGATGAATTCCTACTGCGACACGCAT 66571 || ||||| || || || || || || | |||| || || || |||||||| Sbjct 37899 TATGTCTCGATGGCCTTCTCGATGTCTTCGCCGTGGATG----CCAACGGCTACACGCAT 37954 Query 66572 TAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTC 66631 | |||||| || || | ||| | |||||| |||||| | | || || ||| Sbjct 37955 GAGCATGTGTTGTGGACGCTCAGCAATCTTGCCGTTTATGCGGAGGAGATATGAGCGTTC 38014 Query 66632 CAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTT 66691 || || ||||| ||||| | | ||| ||||| || ||||| | ||| | ||||| Sbjct 38015 CAGGGTCTTAAAGCCAAAGAACTGGTAGTTGAAGTCGCGATCGTACACGATAGCAGAGTT 38074 Query 66692 GAGTTTATCCTTATATTTGTTAACTACATCCATGGTA---ATACT-TGAAATAATCGGAG 66747 | | |||| | | | || | || ||| | ||| ||||| ||||| Sbjct 38075 CAAATCATCCGCGTTCCTTATGACGATGTC----GTACACAGACTCGGAAATCATCGGCT 38130 Query 66748 AATGTTTCCCATTTTTAGGATTGACATAGTTGAATAAATCCTCCATCACTTCACTAAATA 66807 ||||||||| || || || |||| ||||| || |||| | |||| || ||| Sbjct 38131 GATGTTTCCCGTTCTTGGGGTTGATATAGTCATGTAGGTCCTTGACCACTGCAGAGAATT 38190 Query 66808 GtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAATGGCATAAT 66867 | || || || | ||||| |||||||| ||||| || | |||||| | |||||| |||| Sbjct 38191 GCTTCTTGGTCTGCTTGTGAAGATTTGAAACGGCGATGCGAGCGGCAAGAATGGCGTAAT 38250 Query 66868 CCGGATG 66874 | || || Sbjct 38251 CTGGGTG 38257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658166539131240