Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clohesyomyces_20aquaticus_20[genbank_20GCA_5F002105025.1_202017-04- 20] 761 sequences; 49,677,730 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq412 120 3e-22 >seq412 Length=249799 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| | ||||| ||| ||||| | || |||||||| || ||||| || ||| | Sbjct 4300 CCACCTCGCAGACGCAGAACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAC 4359 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||||| ||||| || || || |||| ||||| |||||||| || || Sbjct 4360 AGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCCGGGGGA 4419 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGT-TCCACTGTGTCGGTGGGCTCCAC 139716 ||||| || || || ||| |||||| ||| | | || | || |||| | |||||| Sbjct 4420 ATGCCCTCCTTATCC-TGAATTTTTGATTTGACGTTGTCGATGGTATCGGACGACTCCAC 4478 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | ||| | ||||||||||||| || || ||||| || ||||| Sbjct 4479 CTCGAGGGTGATAGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 4526 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594 || ||||| || | ||| | || ||||| | || ||||| || || ||||| || || Sbjct 4069 TGACCGCCACGGAGACGGAGCACCAAGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCC 4128 Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654 | || | ||| || | ||| ||||||||| |||| ||||||||||| || || Sbjct 4129 GAGAGCGTTCGGCCGTCCTCCAACTGCTTACCAGCAAAGATGAGACGTTGCTGGTCCGGG 4188 Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCC 139714 || || || ||||| || ||| || || | | || | |||||||| | ||| Sbjct 4189 GGAATACCCTCTTTATCCTGGATCTTGGACTTCACGTTGTCGATTGTGTCGGACGACTCA 4248 Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||| | || | |||||||||||| | || || ||||| || |||||| Sbjct 4249 ACCTCTAGCGTGATCGTCTTGCCGGTGAGTGTCTTGACGAAGATCTGCATA 4299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496059281191200