Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clohesyomyces_20aquaticus_20[genbank_20GCA_5F002105025.1_202017-04- 20] 761 sequences; 49,677,730 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq634 230 3e-55 seq46 129 8e-25 >seq634 Length=211807 Score = 230 bits (254), Expect = 3e-55 Identities = 1325/2081 (64%), Gaps = 57/2081 (3%) Strand=Plus/Plus Query 78706 TCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATT 78765 |||| ||| | ||||||||||| ||||| || |||| | || || || ||||| | Sbjct 36201 TCCTGGTCGACGGTGAATTGAATAGGAGCAGAGGCGGCCATTGTTCGGAGGTAGTAGAGG 36260 Query 78766 CCCGTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTC 78825 || || || ||||| || |||||||| ||| ||||| || | ||| | Sbjct 36261 CCGGTCTTGAGACCAAGCTTCCATCCGGCGAAGTGCATCGATGTAATCTTGCCCATGGTA 36320 Query 78826 GGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCA 78885 || || || || || || | || || |||||||||||||| || | ||| || Sbjct 36321 GGCTCCTTCATGTGAATGTTGAGCGACTGGGACTGATCGATGAAGGCGCCACGGTCAGCG 36380 Query 78886 GCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATA 78945 ||||| | ||||| || || | |||||||| | || || || | ||| || Sbjct 36381 GCCATCTGAATGATGGTACGCTGGGAGATTTCCCACACGGTCTTGTATAGCGCCTTGATT 36440 Query 78946 TCTTCTGGAAGGTTTGTATTC---TGAATGGATCCACCATCTGCCATAATCCTATTCTTG 79002 || || |||| ||| | | || || ||||| |||||||| || || || | ||||| Sbjct 36441 TCATCGGGAATGTTAGGAATCCTCTGGATGGAACCACCATCGGCGATGATGCGGTTCTTC 36500 Query 79003 ATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACT 79062 || | ||| ||| | | || ||| | | ||||| || || || || Sbjct 36501 ATGTTGTCAGACCACAGGCCCATGTCAACCAAATCCTTCAGGAGCCAGGGGTTGACGACC 36560 Query 79063 TGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGAT 79122 || || || || | ||| || | || | ||| || || |||||||||||| | || Sbjct 36561 TGGAACTCGCCGGCCAAAACACGGCGGGAGTAGATGTTGGAGGTATATGGTTCGAAGCAT 36620 Query 79123 TCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTA 79182 ||||| | || | |||||| | || || || || ||||| || || || || | | | Sbjct 36621 TCATTGTAGCCAAGAATTTGGGATGTGGAGGCAGTAGGCATGGGGGCAAC-AAGCAGCGA 36679 Query 79183 TTT-CTAAGACCGTATGATCTG--ATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCA 79239 || | || ||| ||| | || || || | || |||| ||||| ||||| || || Sbjct 36680 GTTGCGAACACC--ATGCTGTGCGATCTTTGCCTTGAGAGCATCCCAGTCCCAGAGGTCG 36737 Query 79240 GACGGGACAACATTCCAAAGATCATATTGTAGAATACCGTTACTAG-CGTATGATCCTGT 79298 | || | |||||| | ||||||||| || || || | | || | || || Sbjct 36738 GTGGGCGTGATATTCCACATATCATATTGAAGTATGCCCTG-CGAGACAGGAGAGCCCTC 36796 Query 79299 GTATGTTTCATAAGGTCC---TTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCC 79355 ||| |||||||| || || |||||| ||| | || ||| || | || | Sbjct 36797 GTAAGTTTCATATGGACCAAGTTCCTT---GGCCAGATCGCAAGACGATGTGAGAGCAGC 36853 Query 79356 GTAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGG 79415 || || ||||| || || |||| | ||||| | |||||| | || || || Sbjct 36854 GTGGTAGATGGTCTCAAAGATCTGGGTGTTGAGCTTCCTTGCTTCGGGAGAGTCGAAGGG 36913 Query 79416 ATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATG 79475 | | | || || || || | || || || |||| ||||| ||| || || Sbjct 36914 CAGGCGCAGGGCGAGGAAGGCATCCGCAAGACCCTGGACTCCAAGACCGACAGGCCTGTG 36973 Query 79476 TCTCTTATTAGAAATTTC-AGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTAT 79534 ||| || | || | |||||| |||| || || | ||| | || ||||| || | Sbjct 36974 TCTGAAGTT-GCTGTTGCGAGCTTCAGGAACCGGGTAGTGATTGACCTCGATAATCTTGT 37032 Query 79535 TGAGATTCCTGACT-ATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAA-TCGTC- 79591 | ||||| | || | | || | ||| || || | || || | |||||| | ||| | Sbjct 37033 TCAGATTAC-GAGTGACGACCTGGACGACTTCGTGGAGCTTCTGGAAATCATACTCGCCA 37091 Query 79592 -----CATCTATTACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTC 79646 ||| | ||| || | || | || |||| || || ||||| ||||| Sbjct 37092 CGTTGCATGTCC-ACATACGCAGGGAGTGCAAGCGAGGCCAAGTTGCAGACGGCAACCTC 37150 Query 79647 ATTAGCATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAA 79706 || | | | || | || || || |||||||||||| | ||| ||||| | Sbjct 37151 ATCGGGTGCGGTGTACTCAATGATCTCGGTGCAGAGGTTAGAGCTGCGAATAGTTCCGAG 37210 Query 79707 ATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGT 79766 || | || || || || ||| || |||||||| || || || |||| | ||||| Sbjct 37211 GTTCTTCTGGTTGCTTTTGCGGTTGCATGCATCCTTGTAGAGCATATACGGGTTTCCAGT 37270 Query 79767 TTCAATCTGAGATTCTATAATCGCTTTCCAGA-CGACTCGA-GCCTTTATTATAGACTTG 79824 || |||| | || | || || | ||||| | || | || | | | || | Sbjct 37271 CTCGGTCTGGGCCTCGAGGATGGCGTACCAGAGCTTCTGGGCGCGCACAGTCT---CTCG 37327 Query 79825 TATCTCTTTTCTCTT--TCGTA-TTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACA 79881 | | | | ||| || || ||||| ||| | ||||||||||| || | || Sbjct 37328 TC-CGCGTCCCTCGGCCTCATACTTGTG-ATACAGCTCCTCGAACTCGTCGCCATAGACG 37385 Query 79882 TCGTCTAATCCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACT 79941 ||| | || ||||| ||||| || || | | | ||||||||||| ||||| || Sbjct 37386 TCGGCCAACCCAGGGGCTTCGTTCGGGCAGAAAAGAGTCCACTCTCCATTATCCTGGACC 37445 Query 79942 CGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCC 80001 || ||||| ||||| ||||||||||| ||||| || | ||| | || | ||| Sbjct 37446 CGCTTCATGAAGAGGTCAGGAATCCACAGAGCGTAGAACAAATCACGGGCGCGGATCTCT 37505 Query 80002 TCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA-ATATCAGAATGCCACGGTTC 80060 || || || ||||| |||||| ||||| |||| | | ||| | ||||| || || Sbjct 37506 TCCTTGCCATGGTTCTTGCGAAGATCAAGGAA-GCCAAAGACATCGGCGTGCCATGGCTC 37564 Query 80061 CAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGT 80120 | ||| ||||| | | | || || || || || || ||||| || | || | |||||| Sbjct 37565 GAGGTAGATGGCGAAAGCACCTGGGCGCTTATTGCCACCCTGGTCGACATAACGAGCGGT 37624 Query 80121 GTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGAT 80180 ||| ||||| || | | ||| || || | || ||||| || || || || || ||| Sbjct 37625 GTTGTTATAGACACGAAGCATAGGGATGAGGCCGTTGGACGTTCCGTTCGTTCCACCGAT 37684 Query 80181 ATAGCTTCCACTGGCACGAATATTACTA--ATTGATAGACCTATTCCCCCTGCCATTTTA 80238 || || ||||||| || | | |||| ||||| || || || || | || Sbjct 37685 GTATGAGCCGGTGGCACGGATGCGATGAACATTG--AGACCAATACCGCCAGCGGTCTTG 37742 Query 80239 GAGATTAATGCGCATCGT-TTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCAT 80297 ||||| | ||||| ||| || | ||| || |||||||| || ||||| ||||| | || Sbjct 37743 GAGATCATAGCGCA-CGTCTTCAGCGTGTCGTAGATGCCTTCGATGCTGTCATCCTTGAT 37801 Query 80298 GTTAAGTAGAAAACAGCTAGACATTTG-GTGACGACTAGTTCCCGCATTAAATAAGGTAG 80356 | | || || ||| ||||| || | | | | ||||| || || || | || | Sbjct 37802 ATCGATGAGGAAGCAGGAGGACATCTGTGGGTTGGGT-GTTCCGGCGTTGAAAAGCGTTG 37860 Query 80357 GAGAAGCGTGCGTAAACCATTTTTCAGACA-GTAGATTGTACGTCTCAATAGCTGATTCT 80415 |||| ||||| || || |||| | |||| |||| ||||| ||||| || || |||| Sbjct 37861 GAGACGCGTGTGTGAAGTATTTGTTGGACATGTAG-TTGTATGTCTCGATGGC--CTTCT 37917 Query 80416 ATATCCCATTG--ATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAA 80473 || | | | || || || || || |||||||| | |||||| || || | ||| Sbjct 37918 CGATGTCTTCGCCGTGGATGCCAACGGCTACACGCATGAGCATGTGTTGTGGACGCTCAG 37977 Query 80474 CGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGT 80533 | |||||| ||||| | | || || ||||| || ||||| ||||| | | Sbjct 37978 CAATCTTGCCGTTTATGCGGAGGAGATATGAGCGTTCCAGGGTCTTAAAGCCAAAGAACT 38037 Query 80534 TGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAA 80593 ||| ||||| || ||||| | ||| | ||||| | | |||| | | | | Sbjct 38038 GGTAGTTGAAGTCGCGATCGTACACGATAGCAGAGTTCAAATCATCCGCGTTCCTTATGA 38097 Query 80594 CTACATCCATGGTGATACT-TGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACA 80652 | | | | | | ||| ||||| ||||| ||||||||| || || || || | | Sbjct 38098 CGATGT-CGTACACAGACTCGGAAATCATCGGCTGATGTTTCCCGTTCTTGGGGTTGATA 38156 Query 80653 TAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTT 80712 |||| || |||| | |||| || ||| | || || || | |||||| |||||| Sbjct 38157 TAGTCATGTAGGTCCTTGACCACTGCAGAGAATTGCTTCTTGGTCTGCTTGTGAAGATTT 38216 Query 80713 GATACGGCTATTCTGGCGGCTAAAATGGCATAATCTGGATG 80753 || ||||| || | ||||| | |||||| |||||||| || Sbjct 38217 GAAACGGCGATGCGAGCGGCAAGAATGGCGTAATCTGGGTG 38257 >seq46 Length=404262 Score = 129 bits (142), Expect = 8e-25 Identities = 118/149 (79%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || ||||| ||| ||||| |||||||| | | || ||||||||||| || ||||| Sbjct 337793 CACGCGAAGTCGGTGTGCATGCCCTCGTCACGAGATATGAGTTCGTTGGAGAAGGTGAGG 337734 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAG 50079 |||||||| ||||| ||||| || | ||| || |||||||| || || || || |||||| Sbjct 337733 CCGGGCATGAGGCCGCGCTTCTTCAACCAGAAGATGGACGCGAAGGAACCGGAGAAGAAG 337674 Query 50080 ATTCCTTCTACTGCGGCAAAGGCAACAAG 50108 || |||||||| ||||| |||||||| || Sbjct 337673 ATGCCTTCTACGGCGGCGAAGGCAACGAG 337645 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718261967468040