Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clohesyomyces_20aquaticus_20[genbank_20GCA_5F002105025.1_202017-04- 20] 761 sequences; 49,677,730 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq634 201 2e-46 seq46 86.0 8e-12 >seq634 Length=211807 Score = 201 bits (222), Expect = 2e-46 Identities = 596/902 (66%), Gaps = 18/902 (2%) Strand=Plus/Plus Query 71944 TCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGAC 72003 ||||||||||| || | | | | | || ||||| ||| ||||| || | | | | Sbjct 37365 TCGAACTCGTCGCCATAGACGTCGGCCAACCCAGGGGCTTCGTTCGGGCAGAAAAGAGTC 37424 Query 72004 CACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 72063 |||||||||| ||| | || || ||||| ||||| ||||||||||| ||||| || Sbjct 37425 CACTCTCCATTATCCTGGACCCGCTTCATGAAGAGGTCAGGAATCCACAGAGCGTAGAAC 37484 Query 72064 AGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 72123 | ||| | || | ||| || || || ||||| |||||| ||||| |||| | Sbjct 37485 AAATCACGGGCGCGGATCTCTTCCTTGCCATGGTTCTTGCGAAGATCAAGGAA-GCCAAA 37543 Query 72124 -ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCC 72182 | ||| | ||||| || || | ||| ||||| | | | || || || || || || || Sbjct 37544 GACATCGGCGTGCCATGGCTCGAGGTAGATGGCGAAAGCACCTGGGCGCTTATTGCCACC 37603 Query 72183 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 72242 ||| || | || | ||||||||| ||||| || | | ||| || || | || ||||| Sbjct 37604 CTGGTCGACATAACGAGCGGTGTTGTTATAGACACGAAGCATAGGGATGAGGCCGTTGGA 37663 Query 72243 TGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTGCTAATTGATAGA 72300 | || || || || ||| || || ||||||| || || |||| ||| Sbjct 37664 CGTTCCGTTCGTTCCACCGATGTATGAGCCGGTGGCACGGATGCGATGAACATTG--AGA 37721 Query 72301 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGT-TTTAACGTATCATAGATGCC 72359 || || || || || | || ||||| | ||||| ||| || | ||| || |||||||| Sbjct 37722 CCAATACCGCCAGCGGTCTTGGAGATCATAGCGCA-CGTCTTCAGCGTGTCGTAGATGCC 37780 Query 72360 CTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTG-GTGACGACTAG 72418 || || || |||||| | || | | || || ||| ||||| || | | | | | Sbjct 37781 TTCGATGCTGTCATCCTTGATATCGATGAGGAAGCAGGAGGACATCTGTGGGTTGGGT-G 37839 Query 72419 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACA-GTAGATTG 72477 |||| || || || | || ||||| ||||| || || |||| | |||| |||| ||| Sbjct 37840 TTCCGGCGTTGAAAAGCGTTGGAGACGCGTGTGTGAAGTATTTGTTGGACATGTAG-TTG 37898 Query 72478 TACGTCTCAATAGCTGATTCTATATCCCATTG--ATGTATTCCTACCGCGACACGCATTA 72535 || ||||| || || |||| || | | | || || || || || |||||||| | Sbjct 37899 TATGTCTCGATGGC--CTTCTCGATGTCTTCGCCGTGGATGCCAACGGCTACACGCATGA 37956 Query 72536 ACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCA 72595 ||| || || || | ||| | |||||| ||||| | | || || ||||| Sbjct 37957 GCATGTGTTGTGGACGCTCAGCAATCTTGCCGTTTATGCGGAGGAGATATGAGCGTTCCA 38016 Query 72596 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGA 72655 || ||||| ||||| | | ||| ||||| || ||||| | ||| | || || | Sbjct 38017 GGGTCTTAAAGCCAAAGAACTGGTAGTTGAAGTCGCGATCGTACACGATAGCAGAGTTCA 38076 Query 72656 GTTTATCCTTATATTTGTTAACTATATCCATGGTGATACT-TGAAATAATCGGAGAATGT 72714 | |||| | | | || || | | | | ||| ||||| ||||| |||| Sbjct 38077 AATCATCCGCGTTCCTTATGACGATGT-CGTACACAGACTCGGAAATCATCGGCTGATGT 38135 Query 72715 TTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttt 72774 ||||| || || || || | ||||| || |||| | |||| || ||| | || Sbjct 38136 TTCCCGTTCTTGGGGTTGATATAGTCATGTAGGTCCTTGACCACTGCAGAGAATTGCTTC 38195 Query 72775 tttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCTGGA 72834 || || | |||||| |||||||| ||||| || | ||||| |||||||| |||||||| Sbjct 38196 TTGGTCTGCTTGTGAAGATTTGAAACGGCGATGCGAGCGGCAAGAATGGCGTAATCTGGG 38255 Query 72835 TG 72836 || Sbjct 38256 TG 38257 Score = 104 bits (114), Expect = 3e-17 Identities = 345/536 (64%), Gaps = 3/536 (1%) Strand=Plus/Plus Query 70789 TCCTTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATG 70848 |||| ||| | || || ||||| |||| || ||||| | || || || ||||| | | Sbjct 36201 TCCTGGTCGACGGTGAATTGAATAGGAGCAGAGGCGGCCATTGTTCGGAGGTAGTAGAGG 36260 Query 70849 CCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTA 70908 || || || ||||| || |||||||| || ||||| || | ||| | || Sbjct 36261 CCGGTCTTGAGACCAAGCTTCCATCCGGCGAAGTGCATCGATGTAATCTTGCCCATGGTA 36320 Query 70909 GGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCA 70968 || || |||||||| || | |||||| |||||||||||||| || | ||| || Sbjct 36321 GGCTCCTTCATGTGAATGTTGAGCGACTGGGACTGATCGATGAAGGCGCCACGGTCAGCG 36380 Query 70969 GCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATA 71028 ||||| | ||||| || || | |||||||| | || || || | ||| || Sbjct 36381 GCCATCTGAATGATGGTACGCTGGGAGATTTCCCACACGGTCTTGTATAGCGCCTTGATT 36440 Query 71029 TCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCAATAATCCTATTTTTG 71085 || || |||| ||| | | |||| ||||| |||||||| || || || | || || Sbjct 36441 TCATCGGGAATGTTAGGAATCCTCTGGATGGAACCACCATCGGCGATGATGCGGTTCTTC 36500 Query 71086 ATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACT 71145 || | ||| ||| | | || ||| | | ||||| || || || || Sbjct 36501 ATGTTGTCAGACCACAGGCCCATGTCAACCAAATCCTTCAGGAGCCAGGGGTTGACGACC 36560 Query 71146 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGAC 71205 || || || || | ||| || | || | ||| || || |||||| ||||| | | Sbjct 36561 TGGAACTCGCCGGCCAAAACACGGCGGGAGTAGATGTTGGAGGTATATGGTTCGAAGCAT 36620 Query 71206 TCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTA 71265 ||||| | || | |||||| | || || ||||| ||||| || || || | || Sbjct 36621 TCATTGTAGCCAAGAATTTGGGATGTGGAGGCAGTAGGCATGGGGGCAACAAGCAGCGAG 36680 Query 71266 TTTCTAAGACCATGTGATCGGATTTTATCTTTTAGAGATTCCCAATTCCAAAGATC 71321 || | || |||||| | ||| || | || |||| ||||| | ||| || || Sbjct 36681 TTGCGAACACCATGCTGTGCGATCTTTGCCTTGAGAGCATCCCAGTCCCAGAGGTC 36736 >seq46 Length=404262 Score = 86.0 bits (94), Expect = 8e-12 Identities = 192/285 (67%), Gaps = 5/285 (2%) Strand=Plus/Minus Query 42335 TATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAAT 42394 || ||||||||||| || || |||| || || ||||| || || ||||| || Sbjct 337465 TAGGTATCGATCAAGAGCGAGTATGTTTCCGAGTGGATGTTCTCCATCATGATCTGGAAG 337406 Query 42395 CCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTT 42454 |||||||| |||| ||||||| || || || ||| | ||| || || | | || Sbjct 337405 CCGTAGAAGCATCGCGCCTCGGGCACTTGCACCTCTCCGCTAAAGCGCTCGACCAGGTTC 337346 Query 42455 TCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTT 42514 ||||| || || ||||| ||| || || || || | || || || || | Sbjct 337345 TCGTTGACGATGCCGTCGGAGGCGGCGAAGAAGGCGAGGACGTGGGAGATGAAGAAGCGC 337286 Query 42515 TCGTCCGGTGTT-AAT---TTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTC 42570 |||| || ||| ||| || ||||| || | || ||||| || | ||| | ||||| Sbjct 337285 TCGT-CGTCGTTCAATCGCTTGTTCCAGTCGTGGAGGTCTTTGGAGAGATCGATCTCTTC 337227 Query 42571 TACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGAT 42615 | |||||||| || ||||| ||||| || ||||| | |||||| Sbjct 337226 GGCGGTCCAAAAAGAGGCTTCGGCCTTCTTGTACATTTGCCAGAT 337182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671132815788360