Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Clohesyomyces_20aquaticus_20[genbank_20GCA_5F002105025.1_202017-04-
20] 761 sequences; 49,677,730 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq634 201 2e-46
seq46 86.0 8e-12
>seq634
Length=211807
Score = 201 bits (222), Expect = 2e-46
Identities = 596/902 (66%), Gaps = 18/902 (2%)
Strand=Plus/Plus
Query 71944 TCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGAC 72003
||||||||||| || | | | | | || ||||| ||| ||||| || | | | |
Sbjct 37365 TCGAACTCGTCGCCATAGACGTCGGCCAACCCAGGGGCTTCGTTCGGGCAGAAAAGAGTC 37424
Query 72004 CACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 72063
|||||||||| ||| | || || ||||| ||||| ||||||||||| ||||| ||
Sbjct 37425 CACTCTCCATTATCCTGGACCCGCTTCATGAAGAGGTCAGGAATCCACAGAGCGTAGAAC 37484
Query 72064 AGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 72123
| ||| | || | ||| || || || ||||| |||||| ||||| |||| |
Sbjct 37485 AAATCACGGGCGCGGATCTCTTCCTTGCCATGGTTCTTGCGAAGATCAAGGAA-GCCAAA 37543
Query 72124 -ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCC 72182
| ||| | ||||| || || | ||| ||||| | | | || || || || || || ||
Sbjct 37544 GACATCGGCGTGCCATGGCTCGAGGTAGATGGCGAAAGCACCTGGGCGCTTATTGCCACC 37603
Query 72183 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 72242
||| || | || | ||||||||| ||||| || | | ||| || || | || |||||
Sbjct 37604 CTGGTCGACATAACGAGCGGTGTTGTTATAGACACGAAGCATAGGGATGAGGCCGTTGGA 37663
Query 72243 TGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTGCTAATTGATAGA 72300
| || || || || ||| || || ||||||| || || |||| |||
Sbjct 37664 CGTTCCGTTCGTTCCACCGATGTATGAGCCGGTGGCACGGATGCGATGAACATTG--AGA 37721
Query 72301 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGT-TTTAACGTATCATAGATGCC 72359
|| || || || || | || ||||| | ||||| ||| || | ||| || ||||||||
Sbjct 37722 CCAATACCGCCAGCGGTCTTGGAGATCATAGCGCA-CGTCTTCAGCGTGTCGTAGATGCC 37780
Query 72360 CTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTG-GTGACGACTAG 72418
|| || || |||||| | || | | || || ||| ||||| || | | | | |
Sbjct 37781 TTCGATGCTGTCATCCTTGATATCGATGAGGAAGCAGGAGGACATCTGTGGGTTGGGT-G 37839
Query 72419 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACA-GTAGATTG 72477
|||| || || || | || ||||| ||||| || || |||| | |||| |||| |||
Sbjct 37840 TTCCGGCGTTGAAAAGCGTTGGAGACGCGTGTGTGAAGTATTTGTTGGACATGTAG-TTG 37898
Query 72478 TACGTCTCAATAGCTGATTCTATATCCCATTG--ATGTATTCCTACCGCGACACGCATTA 72535
|| ||||| || || |||| || | | | || || || || || |||||||| |
Sbjct 37899 TATGTCTCGATGGC--CTTCTCGATGTCTTCGCCGTGGATGCCAACGGCTACACGCATGA 37956
Query 72536 ACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCA 72595
||| || || || | ||| | |||||| ||||| | | || || |||||
Sbjct 37957 GCATGTGTTGTGGACGCTCAGCAATCTTGCCGTTTATGCGGAGGAGATATGAGCGTTCCA 38016
Query 72596 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGA 72655
|| ||||| ||||| | | ||| ||||| || ||||| | ||| | || || |
Sbjct 38017 GGGTCTTAAAGCCAAAGAACTGGTAGTTGAAGTCGCGATCGTACACGATAGCAGAGTTCA 38076
Query 72656 GTTTATCCTTATATTTGTTAACTATATCCATGGTGATACT-TGAAATAATCGGAGAATGT 72714
| |||| | | | || || | | | | ||| ||||| ||||| ||||
Sbjct 38077 AATCATCCGCGTTCCTTATGACGATGT-CGTACACAGACTCGGAAATCATCGGCTGATGT 38135
Query 72715 TTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttt 72774
||||| || || || || | ||||| || |||| | |||| || ||| | ||
Sbjct 38136 TTCCCGTTCTTGGGGTTGATATAGTCATGTAGGTCCTTGACCACTGCAGAGAATTGCTTC 38195
Query 72775 tttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCTGGA 72834
|| || | |||||| |||||||| ||||| || | ||||| |||||||| ||||||||
Sbjct 38196 TTGGTCTGCTTGTGAAGATTTGAAACGGCGATGCGAGCGGCAAGAATGGCGTAATCTGGG 38255
Query 72835 TG 72836
||
Sbjct 38256 TG 38257
Score = 104 bits (114), Expect = 3e-17
Identities = 345/536 (64%), Gaps = 3/536 (1%)
Strand=Plus/Plus
Query 70789 TCCTTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATG 70848
|||| ||| | || || ||||| |||| || ||||| | || || || ||||| | |
Sbjct 36201 TCCTGGTCGACGGTGAATTGAATAGGAGCAGAGGCGGCCATTGTTCGGAGGTAGTAGAGG 36260
Query 70849 CCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTA 70908
|| || || ||||| || |||||||| || ||||| || | ||| | ||
Sbjct 36261 CCGGTCTTGAGACCAAGCTTCCATCCGGCGAAGTGCATCGATGTAATCTTGCCCATGGTA 36320
Query 70909 GGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCA 70968
|| || |||||||| || | |||||| |||||||||||||| || | ||| ||
Sbjct 36321 GGCTCCTTCATGTGAATGTTGAGCGACTGGGACTGATCGATGAAGGCGCCACGGTCAGCG 36380
Query 70969 GCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATA 71028
||||| | ||||| || || | |||||||| | || || || | ||| ||
Sbjct 36381 GCCATCTGAATGATGGTACGCTGGGAGATTTCCCACACGGTCTTGTATAGCGCCTTGATT 36440
Query 71029 TCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCAATAATCCTATTTTTG 71085
|| || |||| ||| | | |||| ||||| |||||||| || || || | || ||
Sbjct 36441 TCATCGGGAATGTTAGGAATCCTCTGGATGGAACCACCATCGGCGATGATGCGGTTCTTC 36500
Query 71086 ATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACT 71145
|| | ||| ||| | | || ||| | | ||||| || || || ||
Sbjct 36501 ATGTTGTCAGACCACAGGCCCATGTCAACCAAATCCTTCAGGAGCCAGGGGTTGACGACC 36560
Query 71146 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGAC 71205
|| || || || | ||| || | || | ||| || || |||||| ||||| | |
Sbjct 36561 TGGAACTCGCCGGCCAAAACACGGCGGGAGTAGATGTTGGAGGTATATGGTTCGAAGCAT 36620
Query 71206 TCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTA 71265
||||| | || | |||||| | || || ||||| ||||| || || || | ||
Sbjct 36621 TCATTGTAGCCAAGAATTTGGGATGTGGAGGCAGTAGGCATGGGGGCAACAAGCAGCGAG 36680
Query 71266 TTTCTAAGACCATGTGATCGGATTTTATCTTTTAGAGATTCCCAATTCCAAAGATC 71321
|| | || |||||| | ||| || | || |||| ||||| | ||| || ||
Sbjct 36681 TTGCGAACACCATGCTGTGCGATCTTTGCCTTGAGAGCATCCCAGTCCCAGAGGTC 36736
>seq46
Length=404262
Score = 86.0 bits (94), Expect = 8e-12
Identities = 192/285 (67%), Gaps = 5/285 (2%)
Strand=Plus/Minus
Query 42335 TATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAAT 42394
|| ||||||||||| || || |||| || || ||||| || || ||||| ||
Sbjct 337465 TAGGTATCGATCAAGAGCGAGTATGTTTCCGAGTGGATGTTCTCCATCATGATCTGGAAG 337406
Query 42395 CCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTT 42454
|||||||| |||| ||||||| || || || ||| | ||| || || | | ||
Sbjct 337405 CCGTAGAAGCATCGCGCCTCGGGCACTTGCACCTCTCCGCTAAAGCGCTCGACCAGGTTC 337346
Query 42455 TCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTT 42514
||||| || || ||||| ||| || || || || | || || || || |
Sbjct 337345 TCGTTGACGATGCCGTCGGAGGCGGCGAAGAAGGCGAGGACGTGGGAGATGAAGAAGCGC 337286
Query 42515 TCGTCCGGTGTT-AAT---TTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTC 42570
|||| || ||| ||| || ||||| || | || ||||| || | ||| | |||||
Sbjct 337285 TCGT-CGTCGTTCAATCGCTTGTTCCAGTCGTGGAGGTCTTTGGAGAGATCGATCTCTTC 337227
Query 42571 TACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGAT 42615
| |||||||| || ||||| ||||| || ||||| | ||||||
Sbjct 337226 GGCGGTCCAAAAAGAGGCTTCGGCCTTCTTGTACATTTGCCAGAT 337182
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671132815788360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |