Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clohesyomyces_20aquaticus_20[genbank_20GCA_5F002105025.1_202017-04- 20] 761 sequences; 49,677,730 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq46 183 4e-41 seq634 127 3e-24 >seq46 Length=404262 Score = 183 bits (202), Expect = 4e-41 Identities = 346/505 (69%), Gaps = 17/505 (3%) Strand=Plus/Plus Query 125370 AAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTG 125429 ||||| | |||| | ||||||||| ||| | || || | | || || | || Sbjct 337588 AAGGCCGACTGGGCTCTCCGGTGGATCTCAGACAAAAACTCGACCTTTGCGAACCGCCTC 337647 Query 125430 GTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGG 125489 || || |||||||||||||| ||||||||||| || ||| || ||| ||||||| ||| Sbjct 337648 GTTGCCTTCGCCGCCGTAGAAGGCATCTTCTTCTCCGGTTCCTTCGCGTCCATCTTCTGG 337707 Query 125490 CTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGAC 125549 | ||||||||||| ||||||||||| || || | ||||| | |||||||| ||| Sbjct 337708 TTGAAGAAGCGCGGCCTCATGCCCGGCCTCACCTTCTCCAACGAACTCATATCTCGTGAC 337767 Query 125550 GAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGC 125609 |||||| | ||| ||||| || ||||| || || || ||| | | Sbjct 337768 GAGGGCATGCACACCGACTTCGCGTGCCTACTCTT------CTCTC----TCCTCAACAC 337817 Query 125610 AGATCCAGCGATGAAAAGGTCATCAA---CATTGTAACCGATGCCGTGAGGATAGAACAA 125666 | ||| || |||||| || | ||| | ||||| || || | || || ||| Sbjct 337818 ACGTCCGTCG--CAAAAGGAAGTCGAGGCCATCATCACCGAAGCTGTCACCATCGAGCAA 337875 Query 125667 GAGTTTCTAACCGAATCCCTACCGGTCAGC-ATGATTGGCATGAACTGCAAGCTAATGTG 125725 ||||| || || ||| | ||||| || || | | |||||||||| |||||| ||||| Sbjct 337876 GAGTTCCTCACAGAAGCTCTACC-GTGTGCTCTTCTCGGCATGAACTCCAAGCTCATGTG 337934 Query 125726 CGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGCCGCAAGATTTA 125785 | ||||||| ||||| || || || || || || | | | || ||| | || Sbjct 337935 CCAGTACATCGAGTTCGTCGCCGACCGCCTGCTCTTGGCTCTCGGCAACCAAAAGTTCTA 337994 Query 125786 CAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTT 125845 |||||||| || ||||| || |||||| | ||| || || | |||||||| ||||| Sbjct 337995 CAACGCCACCAACCCCTTCGACTTCATGGAGAACATCTCGCTGGCCGGTAAGACAAACTT 338054 Query 125846 TTTCGAGAAGAAGGTCAGCGAGTAC 125870 |||||||||| |||| | || ||| Sbjct 338055 CTTCGAGAAGAGGGTCGGTGATTAC 338079 Score = 149 bits (164), Expect = 9e-31 Identities = 234/334 (70%), Gaps = 6/334 (2%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| |||||||||| ||||| | ||||| |||||||| | ||||||| ||||||| Sbjct 337182 ATCTGGCAAATGTACAAGAAGGCCGAAGCCTCTTTTTGGACCGCCGAAGAGATCGATCTC 337241 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 ||||| ||||| |||| ||| | | || |||| || ||||| || || || Sbjct 337242 TCCAAAGACCTCCACGACTGGAACAAGCGATTGAACGACGACGAGCGCTTCTTCATCTCC 337301 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGA 125198 ||| | | |||||||| |||| |||||| || ||||||||||| || ||| | || Sbjct 337302 CACGTCCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTCAACGAGAACCTGGTCGAGCGC 337361 Query 125199 TTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATT 125258 || |||| || | || |||| | ||||| ||||| ||||| |||||||| Sbjct 337362 TTTAGCGGAGAGGTGCAAGTGCCCGAGGCGCGATGCTTCTACGGCTTCCAGATCATGATG 337421 Query 125259 GAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCC---G 125315 |||||| | |||||||||| ||||| |||| || | ||||| |||| || | Sbjct 337422 GAGAACATCCACTCGGAAACATACTCGCTCTTGATCGATACCTACATCAGCGAGCCCAAG 337481 Query 125316 CAACGTAAACACATGCTCTTTAACGCAATCGACA 125349 || || | || ||||| ||||| || |||| Sbjct 337482 CAGCGCACCTAC---CTCTTCAACGCCATTGACA 337512 >seq634 Length=211807 Score = 127 bits (140), Expect = 3e-24 Identities = 310/462 (67%), Gaps = 6/462 (1%) Strand=Plus/Minus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||| |||||||| || ||||| ||| | ||| ||||| | || || |||||||| || Sbjct 37606 CAGGGTGGCAATAAGCGCCCAGGTGCTTTCGCCATCTACCTCGAGCCATGGCACGCCGAT 37547 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || |||| ||| | || | ||||| ||| |||| |||||| || ||| | || Sbjct 37546 GTCTTTGGCTTCCTTGATCTTCGCAAGAACCATGGCAAGGAAGAGATCCGCGCCCGTGAT 37487 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055 ||||| || || || ||| | || || | ||||||||||| ||| | || ||| | Sbjct 37486 TTGTTCTACGCTCTGTGGATTCCTGACCTCTTCATGAAGCGGGTCCAGGATAATGGAGAG 37427 Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTT 97115 |||| || | ||||| || | || || || |||| || ||||| ||||| Sbjct 37426 TGGACTCTTTTCTGCCCGAACGAAGCCCCTGGGTTGGCCGACGTCTATGGCGACGAGTTC 37367 Query 97116 GAGGCCAAGTA-CACGGCCTACGAGCAAGAGGGCCG-ATACGTGAGACGAGTCGATGCAC 97173 |||| ||| ||| || ||| ||||| || ||| ||||| || || | Sbjct 37366 GAGGAGCTGTATCAC-AAGTATGAGGCCGAGGGACGCGGACGAGAGAC-TGTGCGCGC-C 37310 Query 97174 GAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTC 97232 |||| || ||| | |||||| | ||| ||| |||||||||| ||||| || ||| Sbjct 37309 CAGAAGCTCTGGTACGCCATCCTCGAGGCCCAGACCGAGACTGGAAACCCGTATATGCTC 37250 Query 97233 TACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCC 97292 ||||||||| | || ||||| |||||||| || | || || || |||| Sbjct 37249 TACAAGGATGCATGCAACCGCAAAAGCAACCAGAAGAACCTCGGAACTATTCGCAGCTCT 37190 Query 97293 AATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAG 97334 || || ||||| || || | |||||| || | || || ||| Sbjct 37189 AACCTCTGCACCGAGATCATTGAGTACACCGCACCCGATGAG 37148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741052150674360