Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Clohesyomyces_20aquaticus_20[genbank_20GCA_5F002105025.1_202017-04-
20] 761 sequences; 49,677,730 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq46 183 4e-41
seq634 127 3e-24
>seq46
Length=404262
Score = 183 bits (202), Expect = 4e-41
Identities = 346/505 (69%), Gaps = 17/505 (3%)
Strand=Plus/Plus
Query 125370 AAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTG 125429
||||| | |||| | ||||||||| ||| | || || | | || || | ||
Sbjct 337588 AAGGCCGACTGGGCTCTCCGGTGGATCTCAGACAAAAACTCGACCTTTGCGAACCGCCTC 337647
Query 125430 GTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGG 125489
|| || |||||||||||||| ||||||||||| || ||| || ||| ||||||| |||
Sbjct 337648 GTTGCCTTCGCCGCCGTAGAAGGCATCTTCTTCTCCGGTTCCTTCGCGTCCATCTTCTGG 337707
Query 125490 CTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGAC 125549
| ||||||||||| ||||||||||| || || | ||||| | |||||||| |||
Sbjct 337708 TTGAAGAAGCGCGGCCTCATGCCCGGCCTCACCTTCTCCAACGAACTCATATCTCGTGAC 337767
Query 125550 GAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGC 125609
|||||| | ||| ||||| || ||||| || || || ||| | |
Sbjct 337768 GAGGGCATGCACACCGACTTCGCGTGCCTACTCTT------CTCTC----TCCTCAACAC 337817
Query 125610 AGATCCAGCGATGAAAAGGTCATCAA---CATTGTAACCGATGCCGTGAGGATAGAACAA 125666
| ||| || |||||| || | ||| | ||||| || || | || || |||
Sbjct 337818 ACGTCCGTCG--CAAAAGGAAGTCGAGGCCATCATCACCGAAGCTGTCACCATCGAGCAA 337875
Query 125667 GAGTTTCTAACCGAATCCCTACCGGTCAGC-ATGATTGGCATGAACTGCAAGCTAATGTG 125725
||||| || || ||| | ||||| || || | | |||||||||| |||||| |||||
Sbjct 337876 GAGTTCCTCACAGAAGCTCTACC-GTGTGCTCTTCTCGGCATGAACTCCAAGCTCATGTG 337934
Query 125726 CGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGCCGCAAGATTTA 125785
| ||||||| ||||| || || || || || || | | | || ||| | ||
Sbjct 337935 CCAGTACATCGAGTTCGTCGCCGACCGCCTGCTCTTGGCTCTCGGCAACCAAAAGTTCTA 337994
Query 125786 CAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTT 125845
|||||||| || ||||| || |||||| | ||| || || | |||||||| |||||
Sbjct 337995 CAACGCCACCAACCCCTTCGACTTCATGGAGAACATCTCGCTGGCCGGTAAGACAAACTT 338054
Query 125846 TTTCGAGAAGAAGGTCAGCGAGTAC 125870
|||||||||| |||| | || |||
Sbjct 338055 CTTCGAGAAGAGGGTCGGTGATTAC 338079
Score = 149 bits (164), Expect = 9e-31
Identities = 234/334 (70%), Gaps = 6/334 (2%)
Strand=Plus/Plus
Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078
|| ||| |||||||||| ||||| | ||||| |||||||| | ||||||| |||||||
Sbjct 337182 ATCTGGCAAATGTACAAGAAGGCCGAAGCCTCTTTTTGGACCGCCGAAGAGATCGATCTC 337241
Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138
||||| ||||| |||| ||| | | || |||| || ||||| || || ||
Sbjct 337242 TCCAAAGACCTCCACGACTGGAACAAGCGATTGAACGACGACGAGCGCTTCTTCATCTCC 337301
Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGA 125198
||| | | |||||||| |||| |||||| || ||||||||||| || ||| | ||
Sbjct 337302 CACGTCCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTCAACGAGAACCTGGTCGAGCGC 337361
Query 125199 TTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATT 125258
|| |||| || | || |||| | ||||| ||||| ||||| ||||||||
Sbjct 337362 TTTAGCGGAGAGGTGCAAGTGCCCGAGGCGCGATGCTTCTACGGCTTCCAGATCATGATG 337421
Query 125259 GAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCC---G 125315
|||||| | |||||||||| ||||| |||| || | ||||| |||| || |
Sbjct 337422 GAGAACATCCACTCGGAAACATACTCGCTCTTGATCGATACCTACATCAGCGAGCCCAAG 337481
Query 125316 CAACGTAAACACATGCTCTTTAACGCAATCGACA 125349
|| || | || ||||| ||||| || ||||
Sbjct 337482 CAGCGCACCTAC---CTCTTCAACGCCATTGACA 337512
>seq634
Length=211807
Score = 127 bits (140), Expect = 3e-24
Identities = 310/462 (67%), Gaps = 6/462 (1%)
Strand=Plus/Minus
Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935
||||| |||||||| || ||||| ||| | ||| ||||| | || || |||||||| ||
Sbjct 37606 CAGGGTGGCAATAAGCGCCCAGGTGCTTTCGCCATCTACCTCGAGCCATGGCACGCCGAT 37547
Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995
|| |||| ||| | || | ||||| ||| |||| |||||| || ||| | ||
Sbjct 37546 GTCTTTGGCTTCCTTGATCTTCGCAAGAACCATGGCAAGGAAGAGATCCGCGCCCGTGAT 37487
Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055
||||| || || || ||| | || || | ||||||||||| ||| | || ||| |
Sbjct 37486 TTGTTCTACGCTCTGTGGATTCCTGACCTCTTCATGAAGCGGGTCCAGGATAATGGAGAG 37427
Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTT 97115
|||| || | ||||| || | || || || |||| || ||||| |||||
Sbjct 37426 TGGACTCTTTTCTGCCCGAACGAAGCCCCTGGGTTGGCCGACGTCTATGGCGACGAGTTC 37367
Query 97116 GAGGCCAAGTA-CACGGCCTACGAGCAAGAGGGCCG-ATACGTGAGACGAGTCGATGCAC 97173
|||| ||| ||| || ||| ||||| || ||| ||||| || || |
Sbjct 37366 GAGGAGCTGTATCAC-AAGTATGAGGCCGAGGGACGCGGACGAGAGAC-TGTGCGCGC-C 37310
Query 97174 GAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTC 97232
|||| || ||| | |||||| | ||| ||| |||||||||| ||||| || |||
Sbjct 37309 CAGAAGCTCTGGTACGCCATCCTCGAGGCCCAGACCGAGACTGGAAACCCGTATATGCTC 37250
Query 97233 TACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCC 97292
||||||||| | || ||||| |||||||| || | || || || ||||
Sbjct 37249 TACAAGGATGCATGCAACCGCAAAAGCAACCAGAAGAACCTCGGAACTATTCGCAGCTCT 37190
Query 97293 AATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAG 97334
|| || ||||| || || | |||||| || | || || |||
Sbjct 37189 AACCTCTGCACCGAGATCATTGAGTACACCGCACCCGATGAG 37148
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741052150674360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |