Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Clohesyomyces_20aquaticus_20[genbank_20GCA_5F002105025.1_202017-04-
20] 761 sequences; 49,677,730 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq412 118 2e-21
seq46 93.3 1e-13
>seq412
Length=249799
Score = 118 bits (130), Expect = 2e-21
Identities = 145/198 (73%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || |||||||| || || ||||| || || || | || ||||| || || || ||
Sbjct 4330 GTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCAAGCTGCTTGCCG 4389
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|| || || || | ||| ||||| || || || || || ||||||||||| |||| |||
Sbjct 4390 GCGAAGATGAGACGCTGCTGATCCGGGGGAATGCCCTCCTTATCCTGAATTTTTGATTTG 4449
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
|| || || | ||||||| | || ||||| || || |||||||| || || || ||
Sbjct 4450 ACGTTGTCGATGGTATCGGACGACTCCACCTCGAGGGTGATAGTCTTGCCGGTCAGGGTC 4509
Query 104543 TTTACAAATATCTGCATT 104560
|| || || |||||||||
Sbjct 4510 TTGACGAAGATCTGCATT 4527
Score = 104 bits (114), Expect = 5e-17
Identities = 141/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || || ||||| || || ||||| || || |||| ||||| || | || || |||
Sbjct 4102 GTCGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTTCGGCCGTCCTCCAACTGCTTACCA 4161
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
||||| || || | || || || || || || || ||||||||||| ||||| | ||
Sbjct 4162 GCAAAGATGAGACGTTGCTGGTCCGGGGGAATACCCTCTTTATCCTGGATCTTGGACTTC 4221
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
|| || || | || ||| | || |||||||| || || ||||| || || |||||
Sbjct 4222 ACGTTGTCGATTGTGTCGGACGACTCAACCTCTAGCGTGATCGTCTTGCCGGTGAGTGTC 4281
Query 104543 TTTACAAATATCTGCAT 104559
|| || || ||||||||
Sbjct 4282 TTGACGAAGATCTGCAT 4298
>seq46
Length=404262
Score = 93.3 bits (102), Expect = 1e-13
Identities = 108/146 (74%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197
||||| || ||||| |||||||| || ||||| || || || || || | ||||| |||
Sbjct 337648 GTTGCCTTCGCCGCCGTAGAAGGCATCTTCTTCTCCGGTTCCTTCGCGTCCATCTTCTGG 337707
Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257
|||||||| | ||||| ||||| || | || ||||| |||||| | ||| | |||
Sbjct 337708 TTGAAGAAGCGCGGCCTCATGCCCGGCCTCACCTTCTCCAACGAACTCATATCTCGTGAC 337767
Query 269258 GAAGGTTTACACTGCGACTTCGCTTG 269283
|| || | ||| ||||||||| ||
Sbjct 337768 GAGGGCATGCACACCGACTTCGCGTG 337793
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151387173505788
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |