Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clohesyomyces_20aquaticus_20[genbank_20GCA_5F002105025.1_202017-04- 20] 761 sequences; 49,677,730 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq412 118 2e-21 seq46 93.3 1e-13 >seq412 Length=249799 Score = 118 bits (130), Expect = 2e-21 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || |||||||| || || ||||| || || || | || ||||| || || || || Sbjct 4330 GTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCAAGCTGCTTGCCG 4389 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| ||||| || || || || || ||||||||||| |||| ||| Sbjct 4390 GCGAAGATGAGACGCTGCTGATCCGGGGGAATGCCCTCCTTATCCTGAATTTTTGATTTG 4449 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||||||| | || ||||| || || |||||||| || || || || Sbjct 4450 ACGTTGTCGATGGTATCGGACGACTCCACCTCGAGGGTGATAGTCTTGCCGGTCAGGGTC 4509 Query 104543 TTTACAAATATCTGCATT 104560 || || || ||||||||| Sbjct 4510 TTGACGAAGATCTGCATT 4527 Score = 104 bits (114), Expect = 5e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| || || |||| ||||| || | || || ||| Sbjct 4102 GTCGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTTCGGCCGTCCTCCAACTGCTTACCA 4161 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || | || || || || || || || ||||||||||| ||||| | || Sbjct 4162 GCAAAGATGAGACGTTGCTGGTCCGGGGGAATACCCTCTTTATCCTGGATCTTGGACTTC 4221 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | || ||| | || |||||||| || || ||||| || || ||||| Sbjct 4222 ACGTTGTCGATTGTGTCGGACGACTCAACCTCTAGCGTGATCGTCTTGCCGGTGAGTGTC 4281 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 4282 TTGACGAAGATCTGCAT 4298 >seq46 Length=404262 Score = 93.3 bits (102), Expect = 1e-13 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197 ||||| || ||||| |||||||| || ||||| || || || || || | ||||| ||| Sbjct 337648 GTTGCCTTCGCCGCCGTAGAAGGCATCTTCTTCTCCGGTTCCTTCGCGTCCATCTTCTGG 337707 Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257 |||||||| | ||||| ||||| || | || ||||| |||||| | ||| | ||| Sbjct 337708 TTGAAGAAGCGCGGCCTCATGCCCGGCCTCACCTTCTCCAACGAACTCATATCTCGTGAC 337767 Query 269258 GAAGGTTTACACTGCGACTTCGCTTG 269283 || || | ||| ||||||||| || Sbjct 337768 GAGGGCATGCACACCGACTTCGCGTG 337793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151387173505788