Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clohesyomyces_20aquaticus_20[genbank_20GCA_5F002105025.1_202017-04- 20] 761 sequences; 49,677,730 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq81 178 2e-40 seq401 105 1e-18 >seq81 Length=91100 Score = 178 bits (196), Expect = 2e-40 Identities = 189/247 (77%), Gaps = 2/247 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| ||||||| ||| |||||| || ||||| || || ||||||||||| ||||| Sbjct 11642 GCCAAGCGCCATCGCAAGAT-TCTTCGTGACAACATTCAGGGTATCACCAAGCCCGCTAT 11584 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||| || ||||||||||| ||||||||| |||| | || |||| || |||| Sbjct 11583 CCGCCGTCTCGCCCGTCGTGGTGGTGTCAAGCGTATCTCGGCCATGATCTACGAGGAGAC 11524 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| | |||| ||||||| || || |||| |||||| || || ||||| Sbjct 11523 CCGTGGTGTCCTCAAGACCTTCCTCGAGGGTGTCATCCGGGATGCTGTCACATACACCGA 11464 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||| || || || ||||| || || ||| | || |||||||||| | || || ||||| Sbjct 11463 GCATGCCAAGCGCAAGACCGTTACTTCCCTCGACGTCGTCTATGCTCTCAAGCGACAAGG 11404 Query 16672 CCGTAAG 16678 |||||| Sbjct 11403 GCGTAAG 11397 >seq401 Length=249862 Score = 105 bits (116), Expect = 1e-18 Identities = 85/100 (85%), Gaps = 2/100 (2%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| |||| ||| |||||| || |||||||| || || |||||||| || | Sbjct 153428 CGCCAAGCGTCACCGCAAGAT-TCTTCGTGACAACATCCAGGGCATAACCAAGCCTGCCA 153370 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 |||||||||| ||||||||||| || ||||||||| |||| Sbjct 153369 TCCGTCGTCTCGCTCGTCGTGGCGGTGTCAAGCGTATCTC 153330 Score = 100 bits (110), Expect = 4e-17 Identities = 124/170 (73%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595 || |||| ||||||| |||| ||| | |||| ||||||| ||| ||| |||| ||||| Sbjct 153272 TGATCTACGAAGAGACCCGTGGTGTCCTCAAGACCTTCCTCGAGAGCGTCATCCGTGATG 153213 Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655 | || || ||||||||||| || || ||||| ||||| ||| |||| |||| || | Sbjct 153212 CCGTCACATACACCGAGCACGCCAAGCGCAAGACCGTCACGTCCCTGGACGTCGTATACG 153153 Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAATCTTCT 16705 | | || || || ||||||| | || || || || ||||| | ||| Sbjct 153152 CTCTCAAGCGCCAGGGCCGTACCCTCTACGGGTTCGGTGGTTAAGCATCT 153103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074504212373