Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Clohesyomyces_20aquaticus_20[genbank_20GCA_5F002105025.1_202017-04-
20] 761 sequences; 49,677,730 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq634 203 4e-47
seq46 122 1e-22
>seq634
Length=211807
Score = 203 bits (224), Expect = 4e-47
Identities = 597/904 (66%), Gaps = 22/904 (2%)
Strand=Plus/Plus
Query 63138 TCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGAC 63197
||||||||||| || | || | | |||| ||||| ||| | ||| || | | | |
Sbjct 37365 TCGAACTCGTCGCCATAGACGTCGGCCAACCCAGGGGCTTCGTTCGGGCAGAAAAGAGTC 37424
Query 63198 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 63257
|||||||| | ||||| || || ||||| ||||| ||||||||||| ||||| ||
Sbjct 37425 CACTCTCCATTATCCTGGACCCGCTTCATGAAGAGGTCAGGAATCCACAGAGCGTAGAAC 37484
Query 63258 AGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 63317
| ||| | || | || || || || ||||| |||||| ||||| |||| |
Sbjct 37485 AAATCACGGGCGCGGATCTCTTCCTTGCCATGGTTCTTGCGAAGATCAAGGAA-GCCAAA 37543
Query 63318 -ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63376
| ||| | ||||| || || | ||| ||||| | | | || || || || || || ||
Sbjct 37544 GACATCGGCGTGCCATGGCTCGAGGTAGATGGCGAAAGCACCTGGGCGCTTATTGCCACC 37603
Query 63377 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGA 63436
||| || | || | ||||||||| ||||| || | | ||| || || | ||||| ||
Sbjct 37604 CTGGTCGACATAACGAGCGGTGTTGTTATAGACACGAAGCATAGGGATGAGGCCGTTGGA 37663
Query 63437 TATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTA--ATTGATAGA 63494
| || || || || ||| || || ||||||| || | | |||| |||
Sbjct 37664 CGTTCCGTTCGTTCCACCGATGTATGAGCCGGTGGCACGGATGCGATGAACATTG--AGA 37721
Query 63495 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGT-TTTAACGTGTCATAGATACC 63553
|| || || || || | || ||||| | ||||| ||| || | |||||| ||||| ||
Sbjct 37722 CCAATACCGCCAGCGGTCTTGGAGATCATAGCGCA-CGTCTTCAGCGTGTCGTAGATGCC 37780
Query 63554 CTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTG-GTGACGACTAG 63612
|| ||||| ||||| | || | | || || ||| ||||| || | | | | |
Sbjct 37781 TTCGATGCTGTCATCCTTGATATCGATGAGGAAGCAGGAGGACATCTGTGGGTTGGGT-G 37839
Query 63613 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGA-AAGTAGATTG 63671
|||| || || || | || ||||| ||||| || || |||| | || | |||| |||
Sbjct 37840 TTCCGGCGTTGAAAAGCGTTGGAGACGCGTGTGTGAAGTATTTGTTGGACATGTAG-TTG 37898
Query 63672 TACGTCTCAATAGCTGAGTCTATATC----CCATTGATGAATTCCTACTGCGACACGCAT 63727
|| ||||| || || || || || || | |||| || || || ||||||||
Sbjct 37899 TATGTCTCGATGGCCTTCTCGATGTCTTCGCCGTGGATG----CCAACGGCTACACGCAT 37954
Query 63728 TAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTC 63787
| |||||| || || | ||| | |||||| |||||| | | || || |||
Sbjct 37955 GAGCATGTGTTGTGGACGCTCAGCAATCTTGCCGTTTATGCGGAGGAGATATGAGCGTTC 38014
Query 63788 CAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTT 63847
|| || ||||| ||||| | | ||| ||||| || ||||| | ||| | |||||
Sbjct 38015 CAGGGTCTTAAAGCCAAAGAACTGGTAGTTGAAGTCGCGATCGTACACGATAGCAGAGTT 38074
Query 63848 GAGTTTATCCTTATATTTGTTAACTATATCCATGGTGATACT-TGAAATAATCGGAGAAT 63906
| | |||| | | | || || | | | | ||| ||||| ||||| ||
Sbjct 38075 CAAATCATCCGCGTTCCTTATGACGATGT-CGTACACAGACTCGGAAATCATCGGCTGAT 38133
Query 63907 GTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtt 63966
||||||| || || || || | ||||| || |||| | |||| || ||| | |
Sbjct 38134 GTTTCCCGTTCTTGGGGTTGATATAGTCATGTAGGTCCTTGACCACTGCAGAGAATTGCT 38193
Query 63967 tttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCCG 64026
| || || | |||||| |||||||| ||||| || | ||||| |||||||| ||||| |
Sbjct 38194 TCTTGGTCTGCTTGTGAAGATTTGAAACGGCGATGCGAGCGGCAAGAATGGCGTAATCTG 38253
Query 64027 GATG 64030
| ||
Sbjct 38254 GGTG 38257
>seq46
Length=404262
Score = 122 bits (134), Expect = 1e-22
Identities = 114/145 (79%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363
|| ||||| ||| ||||| |||||||| | | || ||||||||||| || |||||
Sbjct 337793 CACGCGAAGTCGGTGTGCATGCCCTCGTCACGAGATATGAGTTCGTTGGAGAAGGTGAGG 337734
Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423
|||||||| ||||| ||||| || | ||| || ||||| ||||| || || || ||||||
Sbjct 337733 CCGGGCATGAGGCCGCGCTTCTTCAACCAGAAGATGGACGCGAAGGAACCGGAGAAGAAG 337674
Query 33424 ATTCCTTCTACTGCAGCAAAGGCAA 33448
|| |||||||| || || |||||||
Sbjct 337673 ATGCCTTCTACGGCGGCGAAGGCAA 337649
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622941274214760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |