Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clohesyomyces_20aquaticus_20[genbank_20GCA_5F002105025.1_202017-04- 20] 761 sequences; 49,677,730 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq634 174 1e-38 seq412 129 6e-25 seq46 111 1e-19 seq738 102 8e-17 seq11 98.7 9e-16 >seq634 Length=211807 Score = 174 bits (192), Expect = 1e-38 Identities = 924/1447 (64%), Gaps = 43/1447 (3%) Strand=Plus/Plus Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117 ||||||||||| |||||||||||||| ||||| || | || | ||| || || | ||| Sbjct 36552 TTGACGACCTGGAACTCGCCGGCCAAAACACGGCGGGAGTAGATGTTGGAGGTATATGGT 36611 Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACC 145177 || || | || || | ||| || ||||| | || | || || |||||| || || Sbjct 36612 TCGAAGCATTCATTGTAGCCAAGAATTTGGGATGTGGAGGCAGTAGGCATGGGGGCAACA 36671 Query 145178 AATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCAT 145237 | | || ||||| | || |||| ||| | | |||| || | | |||| ||||| Sbjct 36672 AGCAGCGAGTTGCGAACACCATGCTGTGCGATCTTTGCCTTGAGAGCATCCCAGTCCCAG 36731 Query 145238 AGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGGCTG 145297 || || ||| | | | |||||| || || || | ||||||| | | || | Sbjct 36732 AGGTCGGTGGGCGTGATATTCCACATATCATATTGAAGTATGCCCTGCGAGACAGGAGAG 36791 Query 145298 CCTTGAAAGGAACTGTAAC-TGCCCCAAGTT--TTGGCGAGCTCGCAACTCGCCTCCAGA 145354 || | | || | | | || ||||||| ||||| || |||||| || ||| Sbjct 36792 CCCTC---GTAAGTTTCATATGGACCAAGTTCCTTGGCCAGATCGCAAGACGATGTGAGA 36848 Query 145355 GCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTCTCG 145414 || || || || ||||| || || |||||||| | | ||||| ||| Sbjct 36849 GCAGCGTGGTAGATGGTCTCAAAGATCTGGGTGTTGAGCTTCCTTGCTTCGGGAGAGTCG 36908 Query 145415 TACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGGGC 145474 | |||| |||||| | || ||||| || || ||||| | ||| | |||| ||| Sbjct 36909 AAGGGCAGGCGCAGGGCGAGGAAGGCATCCGCAAGACCCTGGACTCCAAGACCGACAGGC 36968 Query 145475 CGATGTTTCATGTTGCTCATCCTCGCCGACTCGATAGGATATCGATTACGGTCGATAATT 145534 | ||| | | |||||| | | || | || || |||| |||||||| Sbjct 36969 CTGTGTCTGAAGTTGCTGTTGCGAGCTTCAGGAACCGGGTAGTGATTGACCTCGATAATC 37028 Query 145535 TTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAAGTCAAACCGA 145594 || |||| || || || |||| | | | | ||| | || ||| || Sbjct 37029 TTGTTCAGATTACGAGTGACGACCTGGACGACTTCGTGGAGCTTCTGGAAATCATACTC- 37087 Query 145595 GCCTCGTCA-ACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAAACTGCCGT 145653 ||| ||| | | ||||| | | || || | ||| ||||| || || || || Sbjct 37088 GCCACGTTGCATGTCCACATACGCAGGGAGTGCAAGCGAGGCCAAGTTGCAGACGGCAAC 37147 Query 145654 CTCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTACATTTG---ATGGT 145710 ||| |||| || |||| | | |||||||| ||| | || | | || || || Sbjct 37148 CTCATCGGGTGCGGTGTACTCAATGATCTCGGTGCAGAGGTT---AGAGCTGCGAATAGT 37204 Query 145711 TCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCC 145770 ||| || || | ||| || ||||| | |||||| || |||||||||||||| ||||| Sbjct 37205 TCCGAGGTTCTTCTGGTTGCTTTTGCGGTTGCATGCATCCTTGTAGAGCATATACGGGTT 37264 Query 145771 GCCAGTCTCCACCTGCGTCTCCACGATAAAACGGTGCA-AG-TCCTGCGCACGCACCTGC 145828 |||||||| ||| | ||| | ||| || || || | ||| || ||||| | Sbjct 37265 TCCAGTCTCGGTCTGGGCCTCGAGGATGG--CGTACCAGAGCTTCTGGGCGCGCACAGTC 37322 Query 145829 TGCTGGTA-GCGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGCGGAACCGTA 145887 | || || ||| ||||| | || || || || |||||||| ||| || || || Sbjct 37323 T-CTCGTCCGCGTCCCTCGGCCTCATACTTGTGATACAGCTCCTCGAACTCGTCGCCATA 37381 Query 145888 GCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTTGGCGTT 145947 | |||| || || || | ||| || || | || | ||| | || || | | Sbjct 37382 GACGTCGGCCAACCCAGGGGCTTCGTTCGGGCAGAAAAGAGTCCACTCTCCATTATCCTG 37441 Query 145948 GACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGCGCGCTTTGCA 146007 ||| |||| ||| || | || || | |||||| ||||| | ||| || || || | Sbjct 37442 GACCCGCTTCATGAAGAGGTCAGGAATCCACAGAGCGTAGAACAAATCACGGGCGCGGAT 37501 Query 146008 ATCCTCAGCACCCATGTTTCGCTTCAA-ATTAAGCACACTATAGATGTCCGCGTGCCACG 146066 || || || ||| ||| || || ||| | | | ||| || |||||||| | Sbjct 37502 CTCTTCCTTGCC-ATGGTTCTTGCGAAGATCAAGGAAGCCAAAGACATCGGCGTGCCATG 37560 Query 146067 GTTCAATATAGACGGCGAGGGCTCCTTTTCGTTT---GCCACCCTGGTCCACGTGACGTA 146123 | || | |||| ||||| || ||| || || |||||||||||| || | ||| Sbjct 37561 GCTCGAGGTAGATGGCGAAAGCACCTGGGCGCTTATTGCCACCCTGGTCGACATAACGAG 37620 Query 146124 CCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTACG--CCGTTCGT--- 146178 | |||||||| |||| || | ||| || || |||| ||| ||| |||||||| Sbjct 37621 CGGTGTTGTTATAGACACGAAGCATAGGGATGAGGCCGTTGG--ACGTTCCGTTCGTTCC 37678 Query 146179 AGAGTT-TATTCTGGTGCCGCGGGAGCGCACGCAATGAACATTCACGCCGAGACCGCCGC 146237 | | | ||| | |||| || || | || ||||||||| | || | |||||| Sbjct 37679 ACCGATGTAT----GAGCCGGTGGCACGGATGCGATGAACATTGAGACCAATACCGCCAG 37734 Query 146238 CGTACTTGGATATAGCGGCGCA-GTCGCCGAGCGTCTCGTAGATGCCGTCAATGCTATCG 146296 || |||||| || ||||| ||| | ||||| ||||||||||| || ||||| || Sbjct 37735 CGGTCTTGGAGATCATAGCGCACGTCTTC-AGCGTGTCGTAGATGCCTTCGATGCTGTCA 37793 Query 146297 -CTTCGAATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCGGCGTCCCCGCCGAGAA 146355 | | || | ||| || ||||| ||| ||||||| | | || || || || ||| Sbjct 37794 TCCTTGA-TATCGATGAGGAAGCAGGAGGACATCTGTGGGTTGGGTGTTCCGGCGTTGAA 37852 Query 146356 CAACGTCGGGCTCGCGTGCGTAAAC-ATTTTTCGGCTCATCATCCGATACGTTTCGATAG 146414 | ||| || |||||| || || |||| | || ||| || || ||||| | Sbjct 37853 AAGCGTTGGAGACGCGTGTGTGAAGTATTTGTTGGA-CATGTAGTTGTATGTCTCGATGG 37911 Query 146415 CGTCTTGAATGTCGTCGCCATGAATGCCCAAAGCGACGCGCATGAGCATGTGTTGGGGCC 146474 | | | ||||| ||||| || ||||| | || || ||||||||||||||||| || | Sbjct 37912 CCTTCTCGATGTCTTCGCCGTGGATGCCAACGGCTACACGCATGAGCATGTGTTGTGGAC 37971 Query 146475 GCTCCGC 146481 |||| || Sbjct 37972 GCTCAGC 37978 >seq412 Length=249799 Score = 129 bits (142), Expect = 6e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| |||||| || || || | ||| ||||| || || |||||||| ||| | Sbjct 4300 CCACCTCGCAGACGCAGAACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAC 4359 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| || || ||||||||||| ||| |||| | ||||||||| ||||| || Sbjct 4360 AGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCCGGGGGA 4419 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTG-CTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || || || || || ||| ||| || |||| | || | ||||||| ||||| | Sbjct 4420 ATGCCCTCCTTATC-CTGAATTTTTGATTTGACGTTGTCGATGGTATCGGACGACTCCAC 4478 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||| | || || ||||| || || || ||||| |||||||| Sbjct 4479 CTCGAGGGTGATAGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 4526 Score = 118 bits (130), Expect = 1e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || | ||| | || |||||||| ||||||||||| ||| | Sbjct 4528 CCACCACGGAGACGGAGGACGAGATGGAGCGTGGACTCCTTCTGAATGTTGTAGTCGGAC 4587 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| ||||||||||| ||| |||| || ||||| ||||| || ||| Sbjct 4588 AGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCTGGGGGG 4647 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || || || ||| ||| |||| | || | |||||| | || |||| Sbjct 4648 ATGCCCTCCTTATCCTGGATCTTCGATTTGACGTTGTCGATGGTATCGCTCGATTCGACC 4707 Query 131188 TCGACGGTAACGGTTTTACCGGT 131210 || | ||||| ||| |||||||| Sbjct 4708 TCAAGGGTAATGGTCTTACCGGT 4730 Score = 105 bits (116), Expect = 6e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||| | ||| || || | ||| | || |||||||| || |||||||| ||| | Sbjct 4811 CCACCGCGGAGACGAAGGACGAGATGCAGAGTTGACTCCTTCTGGATGTTGTAGTCGGAC 4870 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||||| ||||||||||||||| | || || ||||| ||||| || ||| Sbjct 4871 AGAGTACGTCCATCCTCGAGCTGCTTGCCTGCGAAAATCAAGCGCTGTTGGTCAGGCGGG 4930 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| || || ||| ||| ||||| | || | || || | |||||| | Sbjct 4931 ATGCCTTCCTTATCCTGGATCTTCGACTTGACATTGTCAATCGTGTCCGAGGACTCCACC 4990 Query 131188 TCGACGGTAACGGTTTTACCGGT 131210 || | ||| | ||| || ||||| Sbjct 4991 TCCAAGGTGATGGTCTTGCCGGT 5013 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || || | ||| ||||| || || | ||||||||||| || |||||||| || Sbjct 4072 CCGCCACGGAGACGGAGCACCAAGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAG 4131 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || |||||| | |||||| || || |||| | ||| ||||||||||| || Sbjct 4132 AGCGTTCGGCCGTCCTCCAACTGCTTACCAGCAAAGATGAGACGTTGCTGGTCCGGGGGA 4191 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || ||||| || ||| || ||| | | || | || |||| ||||| | Sbjct 4192 ATACCCTCTTTATCCTGGATCTTGGACTTCACGTTGTCGATTGTGTCGGACGACTCAACC 4251 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | || || ||||| || || || ||||| |||||||| Sbjct 4252 TCTAGCGTGATCGTCTTGCCGGTGAGTGTCTTGACGAAGATCTGCAT 4298 >seq46 Length=404262 Score = 111 bits (122), Expect = 1e-19 Identities = 250/367 (68%), Gaps = 13/367 (4%) Strand=Plus/Plus Query 46234 GGCATCATGCCCGGCCTGACGTTTAGCAACGAGCTGATATCGCGCGACGAGGGCCTGCAT 46293 ||| ||||||||||||| || || |||||| || ||||| || ||||||||| |||| Sbjct 337720 GGCCTCATGCCCGGCCTCACCTTCTCCAACGAACTCATATCTCGTGACGAGGGCATGCAC 337779 Query 46294 ACGGACTTTGCGTGTCTCTACTATAACACTCGCGTGCACGACAAGCTTGCGCCCGACACC 46353 || ||||| ||||| || ||| | ||| | | | | ||| | | || | | | Sbjct 337780 ACCGACTTCGCGTGCCT--ACTCTT---CTCTC-TCCTCAACACACGTCCGTCGCAAAAG 337833 Query 46354 GTGCT-GAG--CATGTTCAAGGAGGCGGTGGCCATTGAGAAGGAGTTTTTTACGGCCGCA 46410 | | ||| ||| ||| || || || |||| ||| | ||||| | || | || Sbjct 337834 GAAGTCGAGGCCATCATCACCGAAGCTGTCACCATCGAGCAAGAGTTCCTCACAGAAGCT 337893 Query 46411 CTGCCCGCTGCCCTGCTGGGCATGAACGCACAGTCAATGTGCGACTACATCGAGTTTGTA 46470 || || ||| || || ||||||||| | || |||||| | ||||||||||| || Sbjct 337894 CTACCGTGTGCTCTTCTCGGCATGAACTCCAAGCTCATGTGCCAGTACATCGAGTTCGTC 337953 Query 46471 GCGGACCGACTGCTCGTGCAGCT-TCACCAGCCGAAGCATTTTC-ACGCGCGCAATCCAT 46528 || ||||| |||||| || ||| || || || || | | | |||| ||| || | Sbjct 337954 GCCGACCGCCTGCTCTTG--GCTCTCGGCAACCAAAAGTTCTACAACGCCACCAACCCCT 338011 Query 46529 TTGAGTTTATGAACAACATCTCCCTGGAGGGCAAAACTAATTTTTTCGAAAAGCGCGTCG 46588 | || || ||| | |||||||| |||| || || || || || ||||| ||| | |||| Sbjct 338012 TCGACTTCATGGAGAACATCTCGCTGGCCGGTAAGACAAACTTCTTCGAGAAGAGGGTCG 338071 Query 46589 GCGAGTA 46595 | || || Sbjct 338072 GTGATTA 338078 >seq738 Length=174967 Score = 102 bits (112), Expect = 8e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || || | ||| ||||| || || | ||||||||||| || |||||||| ||| Sbjct 25229 CCGCCACGGAGACGGAGCACCAAGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAA 25288 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| ||||||||||| ||| |||| |||||||| |||||||| || Sbjct 25289 AGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAAACGCTGTTGGTCCGGGGGA 25348 Query 131128 ATTCCTTCTTTGTC 131141 || || || ||||| Sbjct 25349 ATGCCCTCCTTGTC 25362 >seq11 Length=137347 Score = 98.7 bits (108), Expect = 9e-16 Identities = 105/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||| || || | || | |||||||||||| || |||||||| ||| Sbjct 124714 CCACCACGCAGACGGAGGACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAG 124773 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||| || |||||||| || ||| |||| | |||||| ||||| || || Sbjct 124774 AGGGTGCGGCCGTCTTCGAGCTGCTTTCCGGCGAAGATCAGACGCTGTTGGTCTGGGGGA 124833 Query 131128 ATTCCTTCTTTGTCGGTGA 131146 || || || ||||| |||| Sbjct 124834 ATGCCCTCCTTGTCTGTGA 124852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472008309978240