Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clohesyomyces_20aquaticus_20[genbank_20GCA_5F002105025.1_202017-04- 20] 761 sequences; 49,677,730 total letters Query= NC_008187.1 Length=191100 Score E Sequences producing significant alignments: (Bits) Value seq15 86.0 8e-12 seq146 82.4 9e-11 >seq15 Length=136221 Score = 86.0 bits (94), Expect = 8e-12 Identities = 117/161 (73%), Gaps = 2/161 (1%) Strand=Plus/Minus Query 15036 GCCAGATGCGCACGCCCGAGATTGGCGACAAGTTTTGCTCTGGT-ATGGCGCAAAAGGGC 15094 |||| | |||| ||||| | |||||||| || | ||| | | ||| |||||| Sbjct 118498 GCCAAACGCGCCGCCCCGAACTCGGCGACAAATTCTCCTCGCGCCACGGCCAAAAAGGTG 118439 Query 15095 ACGTGCGGCATGATTTTCCCCCAGGAAGACATGCCCTTTACCGCGTCAGGCATGACGCCC 15154 |||| | | | |||| || || || |||||||||||| ||| |||||| |||||| Sbjct 118438 TCGTGGGTC-TCATTTCACCTCAAGAGGACATGCCCTTTTCCGACAAAGGCATTACGCCC 118380 Query 15155 GACATTATCATCAACCCCAACTGCATCCCGTCCCGCATGAC 15195 ||||| ||||| ||||| | | |||||||||||||||| Sbjct 118379 GACATCATCATGAACCCTCATGGTTTCCCGTCCCGCATGAC 118339 >seq146 Length=312205 Score = 82.4 bits (90), Expect = 9e-11 Identities = 105/145 (72%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 15054 AGATTGGCGACAAGTTTTGCTCTGGTATGGCGCAAAAGGGCACGTGCGGCATGATTTTCC 15113 ||||||||||||||||| ||| || | |||||||| ||| ||| || | | | Sbjct 87763 AGATTGGCGACAAGTTTGCCTCACGTCACGGACAAAAGGGTACGATCGGTATCACCTACA 87822 Query 15114 CCCAGGAAGACATGCCCTTTACCGCGTCAGGCATGACGCCCGACATTATCATCAACCCCA 15173 |||||||||||||| || || | ||| | || || ||||| |||||||| ||| Sbjct 87823 AGCAGGAAGACATGCCTTTCACTCGGGAAGGACTCACCCCTGACATCATCATCAATCCCC 87882 Query 15174 ACTGCATCCCGTCCCGCATGACCAT 15198 || ||| ||||| || |||||||| Sbjct 87883 ACGCCATTCCGTCTCGTATGACCAT 87907 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611386184133600