Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Clohesyomyces_20aquaticus_20[genbank_20GCA_5F002105025.1_202017-04-
20] 761 sequences; 49,677,730 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq412 114 1e-20
>seq412
Length=249799
Score = 114 bits (126), Expect = 1e-20
Identities = 157/217 (72%), Gaps = 8/217 (4%)
Strand=Plus/Minus
Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057
|||||| || || || ||||| ||||||| || | ||||| |||| |||||||||||
Sbjct 4527 AATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACTATCACCCTCGAGGTGGAGTCGTC 4468
Query 25058 TGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113
|| || ||||| |||| || |||||| ||| || || || || ||||| || |
Sbjct 4467 CGATACCATCGACAACGTCA---AATCAAAAATTCA-GGATAAGGAGGGCATTCCCCCGG 4412
Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173
| || ||||| | || || |||||||| || | ||||||| ||||| || ||| |
Sbjct 4411 ATCAGCAGCGTCTCATCTTCGCCGGCAAGCAGCTTGAAGATGGCCGCACCCTGTCCGACT 4352
Query 25174 ACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|||| || || ||||| ||||| || || || || ||
Sbjct 4351 ACAACATCCAGAAAGAGTCCACCCTCCACTTGGTTCT 4315
Score = 86.0 bits (94), Expect = 5e-12
Identities = 134/190 (71%), Gaps = 4/190 (2%)
Strand=Plus/Minus
Query 25023 ACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTG--AAGC 25080
||||| || ||||||| | || |||||||| || ||||| || || || || |||
Sbjct 5013 ACCGGCAAGACCATCACCTTGGAGGTGGAGTCCTCGGACACGATTGA--CAATGTCAAGT 4956
Query 25081 AAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCA 25140
|| ||| || || ||||| || || |||||||||||||| | ||||| || ||||
Sbjct 4955 CGAAGATCCAGGATAAGGAAGGCATCCCGCCTGACCAACAGCGCTTGATTTTCGCAGGCA 4896
Query 25141 AACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTAC 25200
| || | || |||| || ||| || ||| ||||| || || || || || || || |
Sbjct 4895 AGCAGCTCGAGGATGGACGTACTCTGTCCGACTACAACATCCAGAAGGAGTCAACTCTGC 4836
Query 25201 ATTTAGTGCT 25210
|| | || ||
Sbjct 4835 ATCTCGTCCT 4826
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433323981018215
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |