Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clohesyomyces_20aquaticus_20[genbank_20GCA_5F002105025.1_202017-04- 20] 761 sequences; 49,677,730 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq412 114 1e-20 seq738 96.9 3e-15 seq11 87.8 2e-12 >seq412 Length=249799 Score = 114 bits (126), Expect = 1e-20 Identities = 129/173 (75%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 |||||||| || | || ||||| || ||| | | ||||||| | ||| | ||||| Sbjct 4730 ACCGGTAAGACCATTACCCTTGAGGTCGAATCGAGCGATACCATCGACAACGTCAAATCG 4671 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || || |||||||| || || || || ||||| || | || || |||||||| Sbjct 4670 AAGATCCAGGATAAGGAGGGCATCCCCCCAGACCAACAGCGATTGATCTTCGCCGGCAAG 4611 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415 ||| | |||||| ||||||| | ||||| ||||||||||| || || ||||| Sbjct 4610 CAGCTCGAGGATGGCCGCACCCTGTCCGACTACAACATTCAGAAGGAGTCCAC 4558 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| || ||| |||| || || || || | || Sbjct 4298 ATGCAGATCTTCGTCAAGACACTCACCGGCAAGACGATCACGCTAGAGGTTGAGTCGTCC 4239 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | | || || || || || || ||||||||||| || || || Sbjct 4238 GACACAATCGACAACGTGAAGTCCAAGATCCAGGATAAAGAGGGTATTCCCCCGGACCAG 4179 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || ||||| || || ||||| ||||| ||| || |||| || |||||| Sbjct 4178 CAACGTCTCATCTTTGCTGGTAAGCAGTTGGAGGACGGCCGAACGCTCTCGGACTACAAC 4119 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || || || Sbjct 4118 ATCCAGAAGGAGTCGAC 4102 >seq738 Length=174967 Score = 96.9 bits (106), Expect = 3e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || ||||| ||||||||||| ||||| || || ||||| ||| | || || |||||||| Sbjct 25371 AAGATTCAGGACAAGGAGGGCATTCCCCCGGACCAACAGCGTTTGATCTTCGCCGGCAAG 25312 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415 ||| | |||||| ||||||| | ||||| |||||||| || || || || || Sbjct 25311 CAGCTCGAGGATGGCCGCACCCTTTCCGACTACAACATCCAGAAGGAGTCGAC 25259 >seq11 Length=137347 Score = 87.8 bits (96), Expect = 2e-12 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 22311 AGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGA 22370 |||||||||||| ||||| || || ||||| ||||| || || ||||| || ||| | || Sbjct 124848 AGACAAGGAGGGCATTCCCCCAGACCAACAGCGTCTGATCTTCGCCGGAAAGCAGCTCGA 124789 Query 22371 GGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACC 22416 || ||||||| ||||||| |||||||| || || || || ||| Sbjct 124788 AGACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCGACC 124743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419724107153965