Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clohesyomyces_20aquaticus_20[genbank_20GCA_5F002105025.1_202017-04- 20] 761 sequences; 49,677,730 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq738 102 2e-16 seq46 98.7 2e-15 seq153 84.2 4e-11 >seq738 Length=174967 Score = 102 bits (112), Expect = 2e-16 Identities = 125/168 (74%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 280672 CCAAGCTGGGTCTGGACCCCGAGTTTACAACTCACTCTCGCATTCGCGGTCTTTCTGGAG 280731 |||| | ||||| ||| ||||||| ||||||| || || || |||||||| || | Sbjct 80845 CCAACTTCGGTCTTGACGCCGAGTTGGTTTCTCACTCCCGTATGCGTGGTCTTTCCGGTG 80786 Query 280732 GCCAGAAGGTCAAACTTGTCATCGGAGCA-GCTCTGTGGCAACACCCTCACGTGATCGTT 280790 | ||| ||||| | ||| ||| || |||| |||||| | ||| || ||||||| Sbjct 80785 GTCAGCGTGTCAAGGTCGTCCTCGCTGCTTGCTC-GTGGCAGCGCCCCCATTTGATCGTC 80727 Query 280791 CTCGACGAGCCTACCAACTATCTGGACCGCGAGAGCCTGGGCGCTCTG 280838 ||||||||||| ||||||||||| || ||||| ||||| |||||| Sbjct 80726 CTCGACGAGCCGACCAACTATCTCGATCGCGACTCTCTGGGTGCTCTG 80679 >seq46 Length=404262 Score = 98.7 bits (108), Expect = 2e-15 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | ||| || |||| ||||| ||||||||||||||||||||| ||| Sbjct 338060 TCGAAGAAGTTTGTCTTACCGGCCAGCGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTG 338001 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 || ||||| ||| | | ||| || || | || | |||||| || || ||||| | Sbjct 338000 GCGTTGTAGAACTTTTGGTTGCCGAGAGCCAAGAGCAGGCGGTCGGCGACGAACTCGATG 337941 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCC 251711 ||||| | ||| || | ||||||||||| Sbjct 337940 TACTGGCACATGAGCTTGGAGTTCATGCC 337912 >seq153 Length=62389 Score = 84.2 bits (92), Expect = 4e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 279696 GTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTG 279755 || || |||||||| || || ||||||||||| |||| | |||| ||||| || || Sbjct 39527 GTCGGCTCTCTGTCTGGAGGATGGAAGATGAAATTGGCTTTGGCTCGAGCCATGCTTATG 39586 Query 279756 CGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGT 279811 || ||||||||||| |||| || || || ||||| ||| ||||| ||||||| Sbjct 39587 CGAGCCGATGTCCTGTTGCTCGACGAACCTACCAATCACTTGGACGTTGCCAACGT 39642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027826778270001