Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clohesyomyces_20aquaticus_20[genbank_20GCA_5F002105025.1_202017-04- 20] 761 sequences; 49,677,730 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq412 181 2e-40 seq46 116 7e-21 seq11 98.7 2e-15 seq390 86.0 1e-11 >seq412 Length=249799 Score = 181 bits (200), Expect = 2e-40 Identities = 177/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || |||| |||||||| || ||||||||||| |||||||| || ||||| Sbjct 4300 CCACCTCGCAGACGCAGAACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAC 4359 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | |||||| |||||||| ||||| | || || || || ||| Sbjct 4360 AGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCCGGGGGA 4419 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| ||||| || ||||| |||| |||||| |||||||| || | || || || Sbjct 4420 ATGCCCTCCTTATCCTGAATTTTTGATTTGACGTTGTCGATGGTATCGGACGACTCCACC 4479 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || | |||||| || || || || |||||||||||||| ||||||||| Sbjct 4480 TCGAGGGTGATAGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCATT 4527 Score = 143 bits (158), Expect = 5e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||||||| || || ||||| || |||||||| || || ||| Sbjct 4072 CCGCCACGGAGACGGAGCACCAAGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAG 4131 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || |||||||| || || || ||||| | ||| ||||| || ||| Sbjct 4132 AGCGTTCGGCCGTCCTCCAACTGCTTACCAGCAAAGATGAGACGTTGCTGGTCCGGGGGA 4191 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || || || || || ||||| | ||| ||| ||||| ||||| | || || || Sbjct 4192 ATACCCTCTTTATCCTGGATCTTGGACTTCACGTTGTCGATTGTGTCGGACGACTCAACC 4251 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||| || || || ||||| ||||||||||| |||||||| Sbjct 4252 TCTAGCGTGATCGTCTTGCCGGTGAGTGTCTTGACGAAGATCTGCAT 4298 Score = 125 bits (138), Expect = 1e-23 Identities = 154/208 (74%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 |||| || || || || | || | || ||||||||||| || || ||||| || |||| Sbjct 4526 TTCCACCACGGAGACGGAGGACGAGATGGAGCGTGGACTCCTTCTGAATGTTGTAGTCGG 4585 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 | || || | ||||| || | |||||| |||||||| || | || |||||||| || | Sbjct 4586 ACAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCTGGGG 4645 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCT 68411 | ||||| ||||| || || ||||| | |||||| |||||||| || ||| ||||| Sbjct 4646 GGATGCCCTCCTTATCCTGGATCTTCGATTTGACGTTGTCGATGGTATC-GCTCGATTCG 4704 Query 68412 ACTTCCAAGGTGATGGTTTTTCCCGTGA 68439 || || | ||| ||||| || || |||| Sbjct 4705 ACCTCAAGGGTAATGGTCTTACCGGTGA 4732 Score = 122 bits (134), Expect = 2e-22 Identities = 150/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| || || | || | || || || ||||| || |||||||| || ||||| Sbjct 4811 CCACCGCGGAGACGAAGGACGAGATGCAGAGTTGACTCCTTCTGGATGTTGTAGTCGGAC 4870 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || ||||| || | | |||||||| || || Sbjct 4871 AGAGTACGTCCATCCTCGAGCTGCTTGCCTGCGAAAATCAAGCGCTGTTGGTCAGGCGGG 4930 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||||||||| || || ||||| | |||||| || || ||||| | || || || Sbjct 4931 ATGCCTTCCTTATCCTGGATCTTCGACTTGACATTGTCAATCGTGTCCGAGGACTCCACC 4990 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGA 68439 |||||||||||||| || || |||| Sbjct 4991 TCCAAGGTGATGGTCTTGCCGGTGA 5015 >seq46 Length=404262 Score = 116 bits (128), Expect = 7e-21 Identities = 315/472 (67%), Gaps = 10/472 (2%) Strand=Plus/Minus Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994 |||||| || ||||||||||| || |||| |||||||||||| | ||| || | Sbjct 338097 CATGACACCGGCCTTCTGGTAATCACCGACCCTCTTCTCGAAGAAGTTTGTCTTACCGGC 338038 Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAACC 10054 || || ||| |||||||||||| |||||||| |||| | ||| ||| || Sbjct 338037 CAGCGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTGGCGTTGTAGAACTTTTGGTTGCC 337978 Query 10055 GAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTT 10114 ||| || || | |||||| || ||||||||||||||||||| ||| || | ||||| Sbjct 337977 GAGAGCCAAGAGCAGGCGGTCGGCGACGAACTCGATGTACTGGCACATGAGCTTGGAGTT 337918 Query 10115 CATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCGC 10174 |||||| | | || || | || || | ||| || | ||| ||| ||| || Sbjct 337917 CATGCCGAGAAGAGCACACGGTAGAGCTTCTGTGAGGAACTCTTGCTCGATGGTGACAGC 337858 Query 10175 TTCCTCGACGATGCTCTTTACCACGTCAAGGGACAG-CTTGTTCTCGAGCTTCGAATACA 10233 ||| || |||| || || | | | ||| | | || | | ||| || | | Sbjct 337857 TTCGGTGATGATGGCCTCGACTTCCTTTTGCGACGGACGTG-TGTTGAGGAGAGAGAAGA 337799 Query 10234 GGA-GCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACAAA 10292 | | || | | || | | ||| | ||||||||| || |||| |||||||| || Sbjct 337798 GTAGGCACGCGAAGTCGGT-GTGCATGCCCTCGTCACGAGATATGAGTTCGTTGGAGAAG 337740 Query 10293 CCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGG-CGCAGAACGACCCGGA 10351 || ||||||||||| || || || || |||||| |||| ||| ||| || ||||| Sbjct 337739 GTGAGGCCGGGCATGAGGCCGCGCTTCTTCAACCAGAAGATGGACGC-GAAGGAACCGGA 337681 Query 10352 GAACAGAAGA--CCCTCCACGCACACCCAGGCGACGAGGCGCTCTGCGAAGG 10401 || |||||| || || ||| | |||| |||||||| | || |||| Sbjct 337680 GA--AGAAGATGCCTTCTACGGCGGCGAAGGCAACGAGGCGGTTCGCAAAGG 337631 >seq11 Length=137347 Score = 98.7 bits (108), Expect = 2e-15 Identities = 179/277 (65%), Gaps = 49/277 (18%) Strand=Plus/Plus Query 68234 TCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293 ||| || || || || | || | ||| || || ||||| || |||||||| || ||||| Sbjct 124713 TCCACCACGCAGACGGAGGACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGA 124772 Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353 ||| || | || ||||| | |||||| |||||||| || || | |||||||| || || Sbjct 124773 GAGGGTGCGGCCGTCTTCGAGCTGCTTTCCGGCGAAGATCAGACGCTGTTGGTCTGGGGG 124832 Query 68354 AATGCCTTCCTTGTCT-------------------------------------------- 68369 |||||| ||||||||| Sbjct 124833 AATGCCCTCCTTGTCTGTGAGGCGTTAGAAGCTGTGGCGTCGGGGGAGTGGGAGAAGACA 124892 Query 68370 -----TGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGA 68424 |||||||| | |||||| ||||||||||| | ||| || || || | ||||| Sbjct 124893 AACCTTGAATCTTGGACTTGACATTGTCGATGGTGTCGGATGACTCCACCTCGAGGGTGA 124952 Query 68425 TGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | || || |||||||||||||||||||| |||||||| Sbjct 124953 TAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 124989 >seq390 Length=251960 Score = 86.0 bits (94), Expect = 1e-11 Identities = 102/137 (74%), Gaps = 1/137 (1%) Strand=Plus/Plus Query 177128 AGACGCATCACGGACATTCAGTAGCTTACCACGGAGGGGGAAAATTCCGTAGCGATCCCG 177187 ||| ||||| |||||||| |||||||||||||| ||||| || | ||| | |||| | Sbjct 45954 AGATGCATCTCGGACATTGAGTAGCTTACCACGCAGGGGAAAGACACCGAAAAGATCTGG 46013 Query 177188 ACCCACGACAGCAAGGCCAGCTGTGGCAAGCGTGGCGGCAGAGTCACCCTCTGTCAAAAT 177247 | ||||||| ||| ||||||| || ||| ||| ||||| || || || | ||| Sbjct 46014 ATCCACGACCGCACGGCCAGCCAAAGCGAGCAGACTGGCCGAGTCTCCTTCGGTGAGAAT 46073 Query 177248 GAGCGTGCACATTCCAG 177264 || |||||| |||||| Sbjct 46074 TAGAGTGCAC-TTCCAG 46089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921613633066920