Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Clohesyomyces_20aquaticus_20[genbank_20GCA_5F002105025.1_202017-04-
20] 761 sequences; 49,677,730 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq412 181 2e-40
seq46 116 7e-21
seq11 98.7 2e-15
seq390 86.0 1e-11
>seq412
Length=249799
Score = 181 bits (200), Expect = 2e-40
Identities = 177/228 (78%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || |||| |||||||| || ||||||||||| |||||||| || |||||
Sbjct 4300 CCACCTCGCAGACGCAGAACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAC 4359
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | |||||||| | |||||| |||||||| ||||| | || || || || |||
Sbjct 4360 AGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCCGGGGGA 4419
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| ||||| || ||||| |||| |||||| |||||||| || | || || ||
Sbjct 4420 ATGCCCTCCTTATCCTGAATTTTTGATTTGACGTTGTCGATGGTATCGGACGACTCCACC 4479
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462
|| | |||||| || || || || |||||||||||||| |||||||||
Sbjct 4480 TCGAGGGTGATAGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCATT 4527
Score = 143 bits (158), Expect = 5e-29
Identities = 168/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || || | |||||||| || || ||||| || |||||||| || || |||
Sbjct 4072 CCGCCACGGAGACGGAGCACCAAGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAG 4131
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | || || || |||||||| || || || ||||| | ||| ||||| || |||
Sbjct 4132 AGCGTTCGGCCGTCCTCCAACTGCTTACCAGCAAAGATGAGACGTTGCTGGTCCGGGGGA 4191
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| || || || || || ||||| | ||| ||| ||||| ||||| | || || ||
Sbjct 4192 ATACCCTCTTTATCCTGGATCTTGGACTTCACGTTGTCGATTGTGTCGGACGACTCAACC 4251
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | ||||| || || || ||||| ||||||||||| ||||||||
Sbjct 4252 TCTAGCGTGATCGTCTTGCCGGTGAGTGTCTTGACGAAGATCTGCAT 4298
Score = 125 bits (138), Expect = 1e-23
Identities = 154/208 (74%), Gaps = 2/208 (1%)
Strand=Plus/Plus
Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292
|||| || || || || | || | || ||||||||||| || || ||||| || ||||
Sbjct 4526 TTCCACCACGGAGACGGAGGACGAGATGGAGCGTGGACTCCTTCTGAATGTTGTAGTCGG 4585
Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352
| || || | ||||| || | |||||| |||||||| || | || |||||||| || |
Sbjct 4586 ACAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCTGGGG 4645
Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCT 68411
| ||||| ||||| || || ||||| | |||||| |||||||| || ||| |||||
Sbjct 4646 GGATGCCCTCCTTATCCTGGATCTTCGATTTGACGTTGTCGATGGTATC-GCTCGATTCG 4704
Query 68412 ACTTCCAAGGTGATGGTTTTTCCCGTGA 68439
|| || | ||| ||||| || || ||||
Sbjct 4705 ACCTCAAGGGTAATGGTCTTACCGGTGA 4732
Score = 122 bits (134), Expect = 2e-22
Identities = 150/205 (73%), Gaps = 0/205 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| ||||| || || | || | || || || ||||| || |||||||| || |||||
Sbjct 4811 CCACCGCGGAGACGAAGGACGAGATGCAGAGTTGACTCCTTCTGGATGTTGTAGTCGGAC 4870
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||||| || | |||||| || ||||| || | | |||||||| || ||
Sbjct 4871 AGAGTACGTCCATCCTCGAGCTGCTTGCCTGCGAAAATCAAGCGCTGTTGGTCAGGCGGG 4930
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||||||||| || || ||||| | |||||| || || ||||| | || || ||
Sbjct 4931 ATGCCTTCCTTATCCTGGATCTTCGACTTGACATTGTCAATCGTGTCCGAGGACTCCACC 4990
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGA 68439
|||||||||||||| || || ||||
Sbjct 4991 TCCAAGGTGATGGTCTTGCCGGTGA 5015
>seq46
Length=404262
Score = 116 bits (128), Expect = 7e-21
Identities = 315/472 (67%), Gaps = 10/472 (2%)
Strand=Plus/Minus
Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994
|||||| || ||||||||||| || |||| |||||||||||| | ||| || |
Sbjct 338097 CATGACACCGGCCTTCTGGTAATCACCGACCCTCTTCTCGAAGAAGTTTGTCTTACCGGC 338038
Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAACC 10054
|| || ||| |||||||||||| |||||||| |||| | ||| ||| ||
Sbjct 338037 CAGCGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTGGCGTTGTAGAACTTTTGGTTGCC 337978
Query 10055 GAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTT 10114
||| || || | |||||| || ||||||||||||||||||| ||| || | |||||
Sbjct 337977 GAGAGCCAAGAGCAGGCGGTCGGCGACGAACTCGATGTACTGGCACATGAGCTTGGAGTT 337918
Query 10115 CATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCGC 10174
|||||| | | || || | || || | ||| || | ||| ||| ||| ||
Sbjct 337917 CATGCCGAGAAGAGCACACGGTAGAGCTTCTGTGAGGAACTCTTGCTCGATGGTGACAGC 337858
Query 10175 TTCCTCGACGATGCTCTTTACCACGTCAAGGGACAG-CTTGTTCTCGAGCTTCGAATACA 10233
||| || |||| || || | | | ||| | | || | | ||| || | |
Sbjct 337857 TTCGGTGATGATGGCCTCGACTTCCTTTTGCGACGGACGTG-TGTTGAGGAGAGAGAAGA 337799
Query 10234 GGA-GCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACAAA 10292
| | || | | || | | ||| | ||||||||| || |||| |||||||| ||
Sbjct 337798 GTAGGCACGCGAAGTCGGT-GTGCATGCCCTCGTCACGAGATATGAGTTCGTTGGAGAAG 337740
Query 10293 CCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGG-CGCAGAACGACCCGGA 10351
|| ||||||||||| || || || || |||||| |||| ||| ||| || |||||
Sbjct 337739 GTGAGGCCGGGCATGAGGCCGCGCTTCTTCAACCAGAAGATGGACGC-GAAGGAACCGGA 337681
Query 10352 GAACAGAAGA--CCCTCCACGCACACCCAGGCGACGAGGCGCTCTGCGAAGG 10401
|| |||||| || || ||| | |||| |||||||| | || ||||
Sbjct 337680 GA--AGAAGATGCCTTCTACGGCGGCGAAGGCAACGAGGCGGTTCGCAAAGG 337631
>seq11
Length=137347
Score = 98.7 bits (108), Expect = 2e-15
Identities = 179/277 (65%), Gaps = 49/277 (18%)
Strand=Plus/Plus
Query 68234 TCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293
||| || || || || | || | ||| || || ||||| || |||||||| || |||||
Sbjct 124713 TCCACCACGCAGACGGAGGACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGA 124772
Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353
||| || | || ||||| | |||||| |||||||| || || | |||||||| || ||
Sbjct 124773 GAGGGTGCGGCCGTCTTCGAGCTGCTTTCCGGCGAAGATCAGACGCTGTTGGTCTGGGGG 124832
Query 68354 AATGCCTTCCTTGTCT-------------------------------------------- 68369
|||||| |||||||||
Sbjct 124833 AATGCCCTCCTTGTCTGTGAGGCGTTAGAAGCTGTGGCGTCGGGGGAGTGGGAGAAGACA 124892
Query 68370 -----TGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGA 68424
|||||||| | |||||| ||||||||||| | ||| || || || | |||||
Sbjct 124893 AACCTTGAATCTTGGACTTGACATTGTCGATGGTGTCGGATGACTCCACCTCGAGGGTGA 124952
Query 68425 TGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
| || || |||||||||||||||||||| ||||||||
Sbjct 124953 TAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 124989
>seq390
Length=251960
Score = 86.0 bits (94), Expect = 1e-11
Identities = 102/137 (74%), Gaps = 1/137 (1%)
Strand=Plus/Plus
Query 177128 AGACGCATCACGGACATTCAGTAGCTTACCACGGAGGGGGAAAATTCCGTAGCGATCCCG 177187
||| ||||| |||||||| |||||||||||||| ||||| || | ||| | |||| |
Sbjct 45954 AGATGCATCTCGGACATTGAGTAGCTTACCACGCAGGGGAAAGACACCGAAAAGATCTGG 46013
Query 177188 ACCCACGACAGCAAGGCCAGCTGTGGCAAGCGTGGCGGCAGAGTCACCCTCTGTCAAAAT 177247
| ||||||| ||| ||||||| || ||| ||| ||||| || || || | |||
Sbjct 46014 ATCCACGACCGCACGGCCAGCCAAAGCGAGCAGACTGGCCGAGTCTCCTTCGGTGAGAAT 46073
Query 177248 GAGCGTGCACATTCCAG 177264
|| |||||| ||||||
Sbjct 46074 TAGAGTGCAC-TTCCAG 46089
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921613633066920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |