Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clohesyomyces_20aquaticus_20[genbank_20GCA_5F002105025.1_202017-04- 20] 761 sequences; 49,677,730 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq634 271 1e-67 seq46 253 4e-62 >seq634 Length=211807 Score = 271 bits (300), Expect = 1e-67 Identities = 1026/1585 (65%), Gaps = 65/1585 (4%) Strand=Plus/Plus Query 243877 GTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCC-CGCTCTGCGGCCATGGTGATGA-GG 243934 |||||| |||||| ||| |||| ||||| |||| || || |||||||| |||| || Sbjct 36338 GTTGAGCGACTGGGACTGATCGATGAAGG-CGCCACGGTCAGCGGCCATCTGAATGATGG 36396 Query 243935 TCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTTGAGGTGCTCGGGGAACCCT 243994 | | ||| || || || || | |||||||| | | ||||| | ||||| || | Sbjct 36397 TACG-CTGGGAGATTTCCCACACGGTCTTGTATAGCGCCTTGATTTCATCGGG-AATGTT 36454 Query 243995 TCGA-TGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGTGCGCATGTTATCGTTCCA 244053 || | |||| | || || | | |||||| || | |||||| || ||| Sbjct 36455 AGGAATCCTCTGGATGGAACCACCATCGGCGATGATGCGGTTCTTCATGTTGTCAGACCA 36514 Query 244054 CAGGCCCAAGCGCTCCAGCGCCTCGACCAGGTGCCTG---TTCACCACCTGAAACTCTCC 244110 |||||||| | ||| ||| |||| ||| | || || ||||| ||||| || Sbjct 36515 CAGGCCCATGTCAACCAAATCCTT---CAGGAGCCAGGGGTTGACGACCTGGAACTCGCC 36571 Query 244111 CGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCC 244170 | || || ||||| ||||| |||| | | || |||| || || ||| ||| Sbjct 36572 GGCCAAAACACGGCGGGAGTAGATGTTGGAGGTATATGGTTCGAAGCATTCATTGTAGCC 36631 Query 244171 CAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCC 244230 || || || | ||| ||||| |||||||| | || ||||| ||| | || || Sbjct 36632 AAGAATTTGGGATGTGGAGGCAGTAGGCATGGGGGCAACAAGCAGCGAGTTGCGAACACC 36691 Query 244231 GTGCCTCTG-GATGCGGAGTCT-GAGCTCGTTCCAGTCCCACATGCCCGAGAGGTCCTCG 244288 ||| | || ||| | | || ||| | | ||||||||| |||||| | Sbjct 36692 ATGC-TGTGCGAT-CTTTGCCTTGAGAGCATCCCAGTCCCA---------GAGGTCGGTG 36740 Query 244289 CGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAG 244348 | ||| |||||| ||| | || || | |||| ||| || ||||||||| Sbjct 36741 GGCGTGATATTCCACATATCATATTGAAGTATGCCCTGCGAGACAGGAGAGCCCTCGTAA 36800 Query 244349 GTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAG 244408 || || ||||| || |||||| | || | ||| || |||| |||| Sbjct 36801 GTTTCATATGGACCAAGTTCCTTGGCCAGATCGCAAGACGATGTGAGAGCAGCGTGGTAG 36860 Query 244409 ATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCGCAGGTGAAGGGGATGCCC 244468 |||||||| |||||| |||| | | | || | | || |||||| | || | Sbjct 36861 ATGGTCTCAAAGATCTGGGTGTTGAGCTTCCTTGCTTCGGGAGAGTCGAAGGGCAGGCGC 36920 Query 244469 ATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGC--- 244525 | | |||| | || || || ||||| || || | |||| || ||||||| Sbjct 36921 AGGGCGAGGAAGGCATCCGCAAGACCCTGGACTCCAAGACCGACAGGCCTGTGTCTGAAG 36980 Query 244526 TTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGG 244585 ||| || ||| ||||| || || ||||| ||| | ||||| | |||||| || Sbjct 36981 TTGCTGTTGCGA---GCTTCAGGAACCGGGTAGTGATTGACCTCGATAATCTTGTTCAGA 37037 Query 244586 TTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCC 244645 || || |||| | ||||||| ||| ||| ||| || || |||||| || Sbjct 37038 TTACGAGTGACGACCTGGACGACTTCGTGGAGCTTCTGGAAATCATACTCG-------CC 37090 Query 244646 TCGGCG-ATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGC 244704 || | ||| ||| ||| || | ||| || | ||||| |||||||||||| Sbjct 37091 ACGTTGCATG----TCC--ACATACGCAGGGAGTGCAAGCGAGGCCAAGTTGCAGACGGC 37144 Query 244705 CACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGT 244764 ||||| || | |||||||| | |||||||||||||||||| || || || Sbjct 37145 AACCTCATCGGGTGCGGTGTACTCAATGATCTCGGTGCAGAGGTTAGAGCTGCGAATAGT 37204 Query 244765 GCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCC 244824 || |||| || || ||| ||| |||||| || |||||||||||||| | || Sbjct 37205 TCCGAGGTTCTTCTGGTTGCTTTTGCGGTTGCATGCATCCTTGTAGAGCATATACGGGTT 37264 Query 244825 CCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCT 244884 || |||||| |||||| |||||| | || |||||| | | || || ||| Sbjct 37265 TCCAGTCTCGGTCTGGGCCTCGAGGATGGCGTACCAGAGCTTCTGGGCGCGCACAGTCTC 37324 Query 244885 GCGAGCCTTGCCCTCTGCCTCGTAGCGGGTG-TACAGGGCCTCGAACTCGGGGCCCCAGA 244943 || | ||||| ||||| || | ||| ||||| ||||||||||| ||| ||| Sbjct 37325 TCGTCCGCGTCCCTCGGCCTCATA-CTTGTGATACAGCTCCTCGAACTCGTCGCCATAGA 37383 Query 244944 CCTCGTCTAGGCCGGGGCACGACGC-CGGGCACATGAGACTCCACTCGCCGCCGTCCTTG 245002 | ||| | | || ||| | || |||||| | ||| ||||||| || |||| | Sbjct 37384 CGTCGGCCAACCCAGGGG-CTTCGTTCGGGCAGAAAAGAGTCCACTCTCCATTATCCTGG 37442 Query 245003 ACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGC 245062 |||| || |||||||||||| || ||||| || || | ||| | || | || | | Sbjct 37443 ACCCGCTTCATGAAGAGGTCAGGAATCCACAGAGCGTAGAACAAATCACGGGCGCGGATC 37502 Query 245063 TCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGC 245122 || ||| |||| |||||| | || || | ||| ||||||| ||| ||||||| ||| Sbjct 37503 TCTTCCTTGCCATGGTTCTTGCGAAGATCAAGGAAGCCAAAGACATCGGCGTGCCATGGC 37562 Query 245123 TCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCG 245182 || | ||||| |||| || || || ||||| ||||| |||||||| | | | || Sbjct 37563 TCGAGGTAGATGGCGAAAGCACCTGGGCGCTTATTGCCACCCTGGTCGA----CATAACG 37618 Query 245183 AGCG----CGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCC 245238 |||| ||| ||| || || |||| | | |||||| || ||||| || || Sbjct 37619 AGCGGTGTTGTTATAGACACGAAGCATAGGGATGAGGCCGTTGGACGTTCCGTTCGTTCC 37678 Query 245239 CTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACAT----GCCTAGTCCGCCGG 245294 |||||| | ||| || | | || ||| |||| |||| || | ||||| | Sbjct 37679 ACCGATGTATGAGCCGGTGGCAC---GGATGC-GATGAACATTGAGACCAATACCGCCAG 37734 Query 245295 CGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCG 245354 || ||||||||| | ||||| |||| | ||||| ||||| || |||||||| Sbjct 37735 CGGTCTTGGAGATCATAGCGCACGTCTTCAGCGTGTCGTAGATGCCTTCGATGCTGTCAT 37794 Query 245355 ACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACGAGTTGAACA 245414 ||| || | || || ||||||||||||| ||| || ||||| | | | |||||| | Sbjct 37795 CCTTGATATCGATGAGGAAGCAGGAGGACATCTGTGGGTTGGGTGTTCCGGCGTTGAAAA 37854 Query 245415 GAGTGGGGCTGGCGTGGGTAAAGTA 245439 | || || ||||| || ||||| Sbjct 37855 GCGTTGGAGACGCGTGTGTGAAGTA 37879 >seq46 Length=404262 Score = 253 bits (280), Expect = 4e-62 Identities = 331/450 (74%), Gaps = 21/450 (5%) Strand=Plus/Plus Query 42705 CTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTC 42764 || || ||||| ||||||| || |||||||||||||| || ||||||| ||||||||| Sbjct 337645 CTCGTTGCCTTCGCCGCCGTAGAAGGCATCTTCTTCTCCGGTTCCTTCGCGTCCATCTTC 337704 Query 42765 TGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAG 42823 ||| | ||| || || || |||||||| ||||||||||| ||||||||||| | Sbjct 337705 TGGTTGAAGAAGCGCGGCCTC-ATGCCCGGCCTCACCTTCTCCAACGAACTCATATCTCG 337763 Query 42824 GGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAA 42883 |||||||| |||| | ||||| || ||||| || ||||| | ||||| |||| Sbjct 337764 TGACGAGGGCATGCACACCGACTTCGCGTGCCTACTCTTCTC---TCTCCTCA-ACACAC 337819 Query 42884 G-CCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGT 42942 | || ||| | || ||| |||||||||||| || || || |||||| | |||| Sbjct 337820 GTCCGTCGCAAAAGGAAGTCGAGGCCATCATCACCGAAGCTGTCACCATCGAGCAAGAGT 337879 Query 42943 TCCTCACGCAGTCGCTGCCCGTGT-CCCTGGTCGGCATGAACCACGACCTCATGTGCAAG 43001 ||||||| | | || |||||| | || ||||||||||| | | ||||||||| || Sbjct 337880 TCCTCACAGAAGCTCT-ACCGTGTGCTCTTCTCGGCATGAACTCCAAGCTCATGTGCCAG 337938 Query 43002 TACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCC------TC 43055 |||||| ||| ||||||||||| || || | ||| |||| || || || Sbjct 337939 TACATCGAGTTCGTCGCCGACCGCCTGCTCT------TGGCTCTCGGCAACCAAAAGTTC 337992 Query 43056 TACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAAC 43115 |||||| | | |||||||||||| ||||||||||||||| ||| || ||||| ||| Sbjct 337993 TACAACGCCACCAACCCCTTCGACTTCATGGAGAACATCTCGCTGGCCGGTAAGACAAAC 338052 Query 43116 TTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145 || ||||||||| | |||| || |||||| Sbjct 338053 TTCTTCGAGAAGAGGGTCGGTGATTACCAG 338082 Score = 109 bits (120), Expect = 1e-18 Identities = 181/258 (70%), Gaps = 5/258 (2%) Strand=Plus/Plus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| |||||||||||||| | ||| ||||||||||| ||||| || || Sbjct 337182 ATCTGGCAAATGTACAAGAAGGCCGAAGCCTCTTTTTGGACCGCCGAAGAGATCGATCTC 337241 Query 42360 GCCAAGGACACGGCCGGCTGGGA---GTCACTGTCTGAGAACGAAAAGTTTTTCCTCAAA 42416 |||| ||| || |||| | | | || || |||| || ||| || Sbjct 337242 TCCAAAGACCTCCACGACTGGAACAAGCGATTGAACGACGACGAGCGCTTCTTCATCTCC 337301 Query 42417 AACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGG 42476 || | || ||||||||||||||||| |||||||| ||||| |||||||||| | | Sbjct 337302 CACGTCCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTCAACGAGAACCTGGTCGAGCGC 337361 Query 42477 TTCATGAAAGAGGTGC-AGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCAT 42535 || | |||||||| ||| | |||||||| |||||||||||||||||||| || Sbjct 337362 TTTAGCGGAGAGGTGCAAGTGC-CCGAGGCGCGATGCTTCTACGGCTTCCAGATCATGAT 337420 Query 42536 AGAGAACGTGCACTCTGA 42553 |||||| | ||||| || Sbjct 337421 GGAGAACATCCACTCGGA 337438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944330216973360