Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clohesyomyces_20aquaticus_20[genbank_20GCA_5F002105025.1_202017-04- 20] 761 sequences; 49,677,730 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq412 150 4e-31 seq11 87.8 4e-12 >seq412 Length=249799 Score = 150 bits (166), Expect = 4e-31 Identities = 151/195 (77%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || ||||||| || ||||| || ||||| | || || || |||||| Sbjct 4336 TCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCGAAG 4395 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || |||||||| ||| || ||| || || || |||||||| ||||| | ||| ||| Sbjct 4396 ATGAGACGCTGCTGA---TCCGGGGGAATGCCCTCCTTATCCTGAATTTTTGATTTGACG 4452 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | |||| ||| || || ||||| ||||| ||||| |||||||| |||||| Sbjct 4453 TTGTCGATGGTATCGGACGACTCCACCTCGAGGGTGATAGTCTTGCCGGTCAGGGTCTTG 4512 Query 288460 ACGAATATCTGCATT 288474 ||||| ||||||||| Sbjct 4513 ACGAAGATCTGCATT 4527 Score = 134 bits (148), Expect = 3e-26 Identities = 147/194 (76%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| | |||||| || ||||| || || || || || || ||| Sbjct 4108 TCCTTCTGGATGTTGTAGTCCGAGAGCGTTCGGCCGTCCTCCAACTGCTTACCAGCAAAG 4167 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || ||||| || || || ||| || || |||||||||||||| || | |||||| Sbjct 4168 ATGAGACGTTGCTGG---TCCGGGGGAATACCCTCTTTATCCTGGATCTTGGACTTCACG 4224 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | ||| ||| || || || |||||||||||||| ||||| || |||||| Sbjct 4225 TTGTCGATTGTGTCGGACGACTCAACCTCTAGCGTGATCGTCTTGCCGGTGAGTGTCTTG 4284 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 4285 ACGAAGATCTGCAT 4298 Score = 131 bits (144), Expect = 4e-25 Identities = 154/207 (74%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| ||||| | || |||||||| | |||| || || || || || ||||||| Sbjct 4527 TCCACCACGGAGACGGAGGACGAGATGGAGCGTGGACTCCTTCTGAATGTTGTAGTCGGA 4586 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || ||||| || || || | || || || |||||||||| |||||||| ||||| Sbjct 4587 CAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGTTGG---TCTGG 4643 Query 288366 G---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 | || || || ||||||||||| |||| ||| ||||| || || | |||||||||||| Sbjct 4644 GGGGATGCCCTCCTTATCCTGGATCTTCGATTTGACGTTGTCGATGGTATCGCTCGATTC 4703 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGT 288449 || || || || || ||||| ||||| Sbjct 4704 GACCTCAAGGGTAATGGTCTTACCGGT 4730 Score = 105 bits (116), Expect = 2e-17 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||||||||| | ||| |||||||| | || || || ||||| || ||||||| Sbjct 4811 CCACCGCGGAGACGAAGGACGAGATGCAGAGTTGACTCCTTCTGGATGTTGTAGTCGGAC 4870 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || ||||| || || | || || |||||||| |||| |||||||| | ||| Sbjct 4871 AGAGTACGTCCATCCTCGAGCTGCTTGCCTGCGAAAATCAAGCGCTGTTGGTCAGGCGGG 4930 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| ||||||||||| |||| || || || || || | || || || || Sbjct 4931 ATGCCTTCCTTATCCTGGATCTTCGACTTGACATTGTCAATCGTGTCCGAGGACTCCACC 4990 Query 288427 TCGAGCGTGATCGTCTTCCCGGT 288449 || | ||||| ||||| ||||| Sbjct 4991 TCCAAGGTGATGGTCTTGCCGGT 5013 >seq11 Length=137347 Score = 87.8 bits (96), Expect = 4e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| || || | || ||||| |||| || || || ||||| || ||||||| Sbjct 124713 TCCACCACGCAGACGGAGGACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGA 124772 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTG 288356 ||| ||||| |||||||| | || ||||| |||||||||||||||||||| Sbjct 124773 GAGGGTGCGGCCGTCTTCGAGCTGCTTTCCGGCGAAGATCAGACGCTGTTG 124823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179642898000958