Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Clohesyomyces_20aquaticus_20[genbank_20GCA_5F002105025.1_202017-04-
20] 761 sequences; 49,677,730 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq412 150 4e-31
seq11 87.8 4e-12
>seq412
Length=249799
Score = 150 bits (166), Expect = 4e-31
Identities = 151/195 (77%), Gaps = 6/195 (3%)
Strand=Plus/Plus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
||||| ||||| || ||||||| || ||||| || ||||| | || || || ||||||
Sbjct 4336 TCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCGAAG 4395
Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399
|| |||||||| ||| || ||| || || || |||||||| ||||| | ||| |||
Sbjct 4396 ATGAGACGCTGCTGA---TCCGGGGGAATGCCCTCCTTATCCTGAATTTTTGATTTGACG 4452
Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459
|| || || | |||| ||| || || ||||| ||||| ||||| |||||||| ||||||
Sbjct 4453 TTGTCGATGGTATCGGACGACTCCACCTCGAGGGTGATAGTCTTGCCGGTCAGGGTCTTG 4512
Query 288460 ACGAATATCTGCATT 288474
||||| |||||||||
Sbjct 4513 ACGAAGATCTGCATT 4527
Score = 134 bits (148), Expect = 3e-26
Identities = 147/194 (76%), Gaps = 6/194 (3%)
Strand=Plus/Plus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| || ||||| || ||||| | |||||| || ||||| || || || || || || |||
Sbjct 4108 TCCTTCTGGATGTTGTAGTCCGAGAGCGTTCGGCCGTCCTCCAACTGCTTACCAGCAAAG 4167
Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399
|| ||||| || || || ||| || || |||||||||||||| || | ||||||
Sbjct 4168 ATGAGACGTTGCTGG---TCCGGGGGAATACCCTCTTTATCCTGGATCTTGGACTTCACG 4224
Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459
|| || || | ||| ||| || || || |||||||||||||| ||||| || ||||||
Sbjct 4225 TTGTCGATTGTGTCGGACGACTCAACCTCTAGCGTGATCGTCTTGCCGGTGAGTGTCTTG 4284
Query 288460 ACGAATATCTGCAT 288473
||||| ||||||||
Sbjct 4285 ACGAAGATCTGCAT 4298
Score = 131 bits (144), Expect = 4e-25
Identities = 154/207 (74%), Gaps = 6/207 (3%)
Strand=Plus/Plus
Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305
|||||| ||||| | || |||||||| | |||| || || || || || |||||||
Sbjct 4527 TCCACCACGGAGACGGAGGACGAGATGGAGCGTGGACTCCTTCTGAATGTTGTAGTCGGA 4586
Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365
|| ||||| || || || | || || || |||||||||| |||||||| |||||
Sbjct 4587 CAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGTTGG---TCTGG 4643
Query 288366 G---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422
| || || || ||||||||||| |||| ||| ||||| || || | ||||||||||||
Sbjct 4644 GGGGATGCCCTCCTTATCCTGGATCTTCGATTTGACGTTGTCGATGGTATCGCTCGATTC 4703
Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGT 288449
|| || || || || ||||| |||||
Sbjct 4704 GACCTCAAGGGTAATGGTCTTACCGGT 4730
Score = 105 bits (116), Expect = 2e-17
Identities = 145/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||||||||| | ||| |||||||| | || || || ||||| || |||||||
Sbjct 4811 CCACCGCGGAGACGAAGGACGAGATGCAGAGTTGACTCCTTCTGGATGTTGTAGTCGGAC 4870
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| || ||||| || || | || || |||||||| |||| |||||||| | |||
Sbjct 4871 AGAGTACGTCCATCCTCGAGCTGCTTGCCTGCGAAAATCAAGCGCTGTTGGTCAGGCGGG 4930
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| ||||| ||||||||||| |||| || || || || || | || || || ||
Sbjct 4931 ATGCCTTCCTTATCCTGGATCTTCGACTTGACATTGTCAATCGTGTCCGAGGACTCCACC 4990
Query 288427 TCGAGCGTGATCGTCTTCCCGGT 288449
|| | ||||| ||||| |||||
Sbjct 4991 TCCAAGGTGATGGTCTTGCCGGT 5013
>seq11
Length=137347
Score = 87.8 bits (96), Expect = 4e-12
Identities = 86/111 (77%), Gaps = 0/111 (0%)
Strand=Plus/Plus
Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305
|||||| || || | || ||||| |||| || || || ||||| || |||||||
Sbjct 124713 TCCACCACGCAGACGGAGGACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGA 124772
Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTG 288356
||| ||||| |||||||| | || ||||| ||||||||||||||||||||
Sbjct 124773 GAGGGTGCGGCCGTCTTCGAGCTGCTTTCCGGCGAAGATCAGACGCTGTTG 124823
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179642898000958
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |