Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clohesyomyces_20aquaticus_20[genbank_20GCA_5F002105025.1_202017-04- 20] 761 sequences; 49,677,730 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq634 168 7e-37 seq46 132 5e-26 seq412 120 3e-22 >seq634 Length=211807 Score = 168 bits (186), Expect = 7e-37 Identities = 564/867 (65%), Gaps = 17/867 (2%) Strand=Plus/Plus Query 153597 GCAATAGACGCCAGATTACAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCG 153656 |||| || |||| || |||||||| ||| |||| || |||||| | ||||||| Sbjct 37119 GCAAGCGAGGCCAAGTTGCAGACGGCAACCTCATCGGGTGCGGTGTACTCAATGATCTCG 37178 Query 153657 GCGCAGAGGTT---GCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTG 153713 | ||||||||| ||||| | | || | || | ||| ||||||||||| ||| Sbjct 37179 GTGCAGAGGTTAGAGCTGCGAATAGTTCCG---AGGTTCTTCTGGTTGCTTTTGCGGTTG 37235 Query 153714 CACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGATAAAC 153773 || || || ||| ||||||| ||||| || |||||| || | |||| ||| | Sbjct 37236 CATGCATCCTTGTAGAGCATATACGGGTTTCCAGTCTCGGTCTGGGCCTCGAGGATGG-C 37294 Query 153774 CTATGC-AGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGCTCTCGTATCGCTC 153832 || || | ||| || ||||| || || ||| |||||| ||| || | Sbjct 37295 GTACCAGAGCTTCTGGGCGCGCACAGTCTCTCGTCCGCGTCCCTCGGCCTCATACTTGTG 37354 Query 153833 GTACAGTCGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACA 153892 ||||| ||| ||||||||||| ||| |||||| | || || | | ||| || Sbjct 37355 ATACAGCTCCTCGAACTCGTCGCCATAGACGTCGGCCAACCCAGGGGCTTCGTTCGGGCA 37414 Query 153893 CATCAGCGACCACATATCGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAG 153952 | || | |||| | | | | ||| || |||||| || || || | ||| || Sbjct 37415 GAAAAGAGTCCACTCTCCATTATCCTGGACCCGCTTCATGAAGAGGTCAGGAATCCACAG 37474 Query 153953 CGCGTACATGAGGTCGCGCGCCTTGCAATCCTCCGCGCCCATGTTGCGTTTC--AGATTG 154010 ||||| | | || || || | || ||| ||| ||| | | || | |||| Sbjct 37475 AGCGTAGAACAAATCACGGGCGCGGATCTCTTCCTTGCC-ATGGTTC-TTGCGAAGATCA 37532 Query 154011 AGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGC 154070 || | || | ||| ||||||||||| || || | ||||| ||| | |||||| ||| Sbjct 37533 AGGAAGCCAAAGACATCGGCGTGCCATGGCTCGAGGTAGATGGCGAAAGCACCTGGGCGC 37592 Query 154071 TTT---CCGCCCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCC 154127 || || ||||| ||||| | || | | ||||| |||| || | ||| || Sbjct 37593 TTATTGCCACCCTGGTCGACATAACGAGCGGTGTTGTTATAGACACGAAGCATAGGGATG 37652 Query 154128 AGGCCGCTTGCGGTGCCGTTGGTCGAATTGATCTTGCTGCCGCGGGCGCGCACTTGATGC 154187 |||||| | | || ||||| || | ||| | |||| ||| || | |||| Sbjct 37653 AGGCCGTTGGACGTTCCGTTCGTTCCACCGATGTATGAGCCGGTGGCACGGATGCGATGA 37712 Query 154188 ACGTTAACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCA-GTCGCCCAGCGTCCT 154246 || || | ||||| ||||| || ||| || || |||||| ||| | ||||| Sbjct 37713 ACATTGAGACCAATACCGCCAGCGGTCTTGGAGATCATAGCGCACGTCTTC-AGCGTGTC 37771 Query 154247 GTAGATGCCGTCGATGCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGCGG 154306 ||||||||| |||||||| || || || ||| | ||| || || |||| || || Sbjct 37772 GTAGATGCCTTCGATGCTGTCATCCTTGATATCGATGAGGAAGCAGGAGGACATCTGTGG 37831 Query 154307 AATGCGCGTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTCAT 154366 || | ||||| || || || || ||| |||||| || || ||| | | ||| Sbjct 37832 GTTGGGTGTTCCGGCGTTGAAAAGCGTTGGAGACGCGTGTGTGAAGTATTTGTTGGACAT 37891 Query 154367 CATGCGGTACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGCG 154426 | ||| || |||||||| | ||||| || |||||||| ||||| | || || || Sbjct 37892 GTAGTTGTATGTCTCGATGGCCTTCTCGATGTCTTCGCCGTGGATGCCAACGGCTACACG 37951 Query 154427 CATGAGCATGTGCTGCGGACGTTCGGC 154453 |||||||||||| || ||||| || || Sbjct 37952 CATGAGCATGTGTTGTGGACGCTCAGC 37978 >seq46 Length=404262 Score = 132 bits (146), Expect = 5e-26 Identities = 302/451 (67%), Gaps = 25/451 (6%) Strand=Plus/Plus Query 52398 CGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCCGCCATC 52457 ||| | || ||||||||| || || ||| | || || ||||| ||| || ||||| Sbjct 337642 CGCCTCGTTGCCTTCGCCGCCGTAGAAGGCATCTTCTTCTCCGGTTCCTTCGCGTCCATC 337701 Query 52458 TTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCG 52517 || | | || | | ||| | ||||||||||| || ||| |||||| | ||||| Sbjct 337702 TTCTGGTTGAAGAAGCGCGGCCTCATGCCCGGCCTCACCTTCTCCAACGAACTCATATCT 337761 Query 52518 CGCGACGAAGGACTGCACACGGACTTTGCGTGCCT---CTACTA------CAAGACGCG- 52567 || ||||| || ||||||| ||||| |||||||| || || ||| || || Sbjct 337762 CGTGACGAGGGCATGCACACCGACTTCGCGTGCCTACTCTTCTCTCTCCTCAACACACGT 337821 Query 52568 -CGTGACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAGGAGGCGGTGGCTA 52626 ||| || |||| ||| | ||| | ||| ||| || || || | | Sbjct 337822 CCGT---CGCAAAA--GGA-----AGTCGAGGC----CATCATCACCGAAGCTGTCACCA 337867 Query 52627 TCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGT 52686 |||| | ||||| | || | || || ||| | || || ||||||||| | || Sbjct 337868 TCGAGCAAGAGTTCCTCACAGAAGCTCTACCGTGTGCTCTTCTCGGCATGAACTCCAAGC 337927 Query 52687 CCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGCCAA 52746 ||||||| ||||||||||||| || || || || ||| | || ||||| | | || Sbjct 337928 TCATGTGCCAGTACATCGAGTTCGTCGCCGACCGCCTGCTCTTGGCTCTCGGCAACCAAA 337987 Query 52747 AGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGA 52806 ||| || |||||| ||| || || || || ||| | ||||| ||||| | || |||| Sbjct 337988 AGTTCTACAACGCCACCAACCCCTTCGACTTCATGGAGAACATCTCGCTGGCCGGTAAGA 338047 Query 52807 CCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 | ||||| ||||||||| | ||||| || || Sbjct 338048 CAAACTTCTTCGAGAAGAGGGTCGGTGATTA 338078 >seq412 Length=249799 Score = 120 bits (132), Expect = 3e-22 Identities = 166/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||||| ||||| ||| || || | | | ||||| || || |||||||||||| | Sbjct 4300 CCACCTCGCAGACGCAGAACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAC 4359 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || || || || || |||| |||| |||||||| || ||||| || Sbjct 4360 AGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCCGGGGGA 4419 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 || || || || || ||| |||||| ||| | ||| || | ||| |||| |||||||| Sbjct 4420 ATGCCCTCCTTATC-CTGAATTTTTGATTTGACGTTG-TCGATGGTATCGGACGACTCCA 4477 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||||| || | || || || ||||| || || || || |||||||| Sbjct 4478 CCTCGAGGGTGATAGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 4526 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| || | ||| | || || || | | |||||||| || ||||||||||| Sbjct 4072 CCGCCACGGAGACGGAGCACCAAGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAG 4131 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || |||||| | || ||||| | | |||| ||||| || |||||||| || Sbjct 4132 AGCGTTCGGCCGTCCTCCAACTGCTTACCAGCAAAGATGAGACGTTGCTGGTCCGGGGGA 4191 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 ||||| ||||| || ||| || || | | || | ||||||| |||||| ||| Sbjct 4192 ATACCCTCTTTATCCTGGATCTTGGACTTCACGTTGTCGATTGTGTCGGACGACTCAACC 4251 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | ||| | ||| || || || || || || || || |||||||| Sbjct 4252 TCTAGCGTGATCGTCTTGCCGGTGAGTGTCTTGACGAAGATCTGCAT 4298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496257679303920