Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Clohesyomyces_20aquaticus_20[genbank_20GCA_5F002105025.1_202017-04-
20] 761 sequences; 49,677,730 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq46 125 7e-24
seq412 123 2e-23
>seq46
Length=404262
Score = 125 bits (138), Expect = 7e-24
Identities = 293/443 (66%), Gaps = 27/443 (6%)
Strand=Plus/Plus
Query 47148 GCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTTGCGGCGATATTTTACATG 47207
|| |||||| ||| || ||| |||||||||| || ||| ||| | || || | ||
Sbjct 337651 GCCTTCGCCGCCGTAGAAGGCATCTTCTTCTCCGGTTCCTTCGCGTCCATCTTCTGGTTG 337710
Query 47208 AAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGACGAA 47267
|| | || | |||||||||||||| || |||||| || || || | |||||
Sbjct 337711 AAGAAGCGCGGCCTCATGCCCGGCCTCACCTTCTCCAACGAACTCATATCTCGTGACGAG 337770
Query 47268 GGCCTGCACACCAACTTTGCCTG----------TCTCTACTACAACACTAGA--GTCGAT 47315
||| |||||||| |||| || || ||||| || |||||| | ||||
Sbjct 337771 GGCATGCACACCGACTTCGCGTGCCTACTCTTCTCTCTCCT-CAACACACGTCCGTCG-- 337827
Query 47316 CAAAAGTTGGACGTGCCCACCGTCAGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATG 47375
|||||| | || | ||| | ||| ||||||| ||| |||| |||
Sbjct 337828 CAAAAGGAAGTCGAGGCCATCATCA------------CCGAAGCTGTCACCATCGAGCAA 337875
Query 47376 GAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGA 47435
||||| || | || ||||| || || | | || |||||| | || | ||| |
Sbjct 337876 GAGTTCCTCACAGAAGCTCTACCGTGTGCTCTTCTCGGCATGAACTCCAAGCTCATGTGC 337935
Query 47436 AAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCCAAGATTTAC 47495
|||||||||| || |||||||||||||||||| | || | | ||| | |||
Sbjct 337936 CAGTACATCGAGTTCGTCGCCGACCGCCTGCTCTTGGCTCTCGGCAACCAAAAGTTCTAC 337995
Query 47496 CACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTT 47555
|| || || || ||||| || ||| | ||||| ||||| | || ||||| |||||
Sbjct 337996 AACGCCACCAACCCCTTCGACTTCATGGAGAACATCTCGCTGGCCGGTAAGACAAACTTC 338055
Query 47556 TTCGAGAAGCGCGTCGGCGAATA 47578
||||||||| | ||||| || ||
Sbjct 338056 TTCGAGAAGAGGGTCGGTGATTA 338078
>seq412
Length=249799
Score = 123 bits (136), Expect = 2e-23
Identities = 168/229 (73%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | |||| ||||| || | || |||||||| || || ||||| ||| |
Sbjct 4300 CCACCTCGCAGACGCAGAACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAC 4359
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| ||||| ||| || ||||| || || ||| |||| | ||||||||||| || ||
Sbjct 4360 AGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCCGGGGGA 4419
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTG-CTTGA-GTTGTTCGACGGTGTCCGTACTCTCGA 127064
||||||||||| ||| ||| ||| || |||| |||| |||| ||| || | ||| |
Sbjct 4420 ATGCCCTCCTTATCC-TGAATTTTTGATTTGACGTTG-TCGATGGTATCGGACGACTCCA 4477
Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
| |||| ||| | || ||||||||||| || || || || ||||||||
Sbjct 4478 CCTCGAGGGTGATAGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 4526
Score = 96.9 bits (106), Expect = 3e-15
Identities = 146/205 (71%), Gaps = 2/205 (1%)
Strand=Plus/Plus
Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945
|||||| || | || | || | ||| | ||| ||||| || ||||| ||||| |||
Sbjct 4527 TCCACCACGGAGACGGAGGACGAGATGGAGCGTGGACTCCTTCTGAATGTTGTAGTCGGA 4586
Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005
|| ||||| ||| || ||||| || || ||| ||||||||||||| || || || ||
Sbjct 4587 CAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCTGGGGG 4646
Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGA 127064
||||||||||| ||| ||| ||| |||| |||| |||| ||| || | ||||
Sbjct 4647 GATGCCCTCCTTATCCTGGATCTTCGATTTGACGTTG-TCGATGGTATCGCTCGATTCGA 4705
Query 127065 CTTCGACGGTCACCGTTTTGCCGGT 127089
| || | ||| | || || |||||
Sbjct 4706 CCTCAAGGGTAATGGTCTTACCGGT 4730
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475496276798640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |