Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clohesyomyces_20aquaticus_20[genbank_20GCA_5F002105025.1_202017-04- 20] 761 sequences; 49,677,730 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq46 125 7e-24 seq412 123 2e-23 >seq46 Length=404262 Score = 125 bits (138), Expect = 7e-24 Identities = 293/443 (66%), Gaps = 27/443 (6%) Strand=Plus/Plus Query 47148 GCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTTGCGGCGATATTTTACATG 47207 || |||||| ||| || ||| |||||||||| || ||| ||| | || || | || Sbjct 337651 GCCTTCGCCGCCGTAGAAGGCATCTTCTTCTCCGGTTCCTTCGCGTCCATCTTCTGGTTG 337710 Query 47208 AAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGACGAA 47267 || | || | |||||||||||||| || |||||| || || || | ||||| Sbjct 337711 AAGAAGCGCGGCCTCATGCCCGGCCTCACCTTCTCCAACGAACTCATATCTCGTGACGAG 337770 Query 47268 GGCCTGCACACCAACTTTGCCTG----------TCTCTACTACAACACTAGA--GTCGAT 47315 ||| |||||||| |||| || || ||||| || |||||| | |||| Sbjct 337771 GGCATGCACACCGACTTCGCGTGCCTACTCTTCTCTCTCCT-CAACACACGTCCGTCG-- 337827 Query 47316 CAAAAGTTGGACGTGCCCACCGTCAGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATG 47375 |||||| | || | ||| | ||| ||||||| ||| |||| ||| Sbjct 337828 CAAAAGGAAGTCGAGGCCATCATCA------------CCGAAGCTGTCACCATCGAGCAA 337875 Query 47376 GAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGA 47435 ||||| || | || ||||| || || | | || |||||| | || | ||| | Sbjct 337876 GAGTTCCTCACAGAAGCTCTACCGTGTGCTCTTCTCGGCATGAACTCCAAGCTCATGTGC 337935 Query 47436 AAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCCAAGATTTAC 47495 |||||||||| || |||||||||||||||||| | || | | ||| | ||| Sbjct 337936 CAGTACATCGAGTTCGTCGCCGACCGCCTGCTCTTGGCTCTCGGCAACCAAAAGTTCTAC 337995 Query 47496 CACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTT 47555 || || || || ||||| || ||| | ||||| ||||| | || ||||| ||||| Sbjct 337996 AACGCCACCAACCCCTTCGACTTCATGGAGAACATCTCGCTGGCCGGTAAGACAAACTTC 338055 Query 47556 TTCGAGAAGCGCGTCGGCGAATA 47578 ||||||||| | ||||| || || Sbjct 338056 TTCGAGAAGAGGGTCGGTGATTA 338078 >seq412 Length=249799 Score = 123 bits (136), Expect = 2e-23 Identities = 168/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| ||||| || | || |||||||| || || ||||| ||| | Sbjct 4300 CCACCTCGCAGACGCAGAACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAC 4359 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || ||||| || || ||| |||| | ||||||||||| || || Sbjct 4360 AGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCCGGGGGA 4419 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTG-CTTGA-GTTGTTCGACGGTGTCCGTACTCTCGA 127064 ||||||||||| ||| ||| ||| || |||| |||| |||| ||| || | ||| | Sbjct 4420 ATGCCCTCCTTATCC-TGAATTTTTGATTTGACGTTG-TCGATGGTATCGGACGACTCCA 4477 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | |||| ||| | || ||||||||||| || || || || |||||||| Sbjct 4478 CCTCGAGGGTGATAGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 4526 Score = 96.9 bits (106), Expect = 3e-15 Identities = 146/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| || | || | || | ||| | ||| ||||| || ||||| ||||| ||| Sbjct 4527 TCCACCACGGAGACGGAGGACGAGATGGAGCGTGGACTCCTTCTGAATGTTGTAGTCGGA 4586 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 || ||||| ||| || ||||| || || ||| ||||||||||||| || || || || Sbjct 4587 CAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCTGGGGG 4646 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGA 127064 ||||||||||| ||| ||| ||| |||| |||| |||| ||| || | |||| Sbjct 4647 GATGCCCTCCTTATCCTGGATCTTCGATTTGACGTTG-TCGATGGTATCGCTCGATTCGA 4705 Query 127065 CTTCGACGGTCACCGTTTTGCCGGT 127089 | || | ||| | || || ||||| Sbjct 4706 CCTCAAGGGTAATGGTCTTACCGGT 4730 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475496276798640