Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clohesyomyces_20aquaticus_20[genbank_20GCA_5F002105025.1_202017-04- 20] 761 sequences; 49,677,730 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq634 251 9e-62 seq46 138 1e-27 >seq634 Length=211807 Score = 251 bits (278), Expect = 9e-62 Identities = 1121/1747 (64%), Gaps = 29/1747 (2%) Strand=Plus/Plus Query 115548 GGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATG 115607 |||| ||| |||||||||||| | || |||||||| || ||||||| | | || Sbjct 36236 GGCCATTGTTCGGAGGTAGTAGAGGCCGGTCTTGAGACCAAGCTTCCATCCGGCGAAGTG 36295 Query 115608 CATTGAGGACAACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTG 115667 ||| || | | |||| | || || | |||| | ||| | ||||| || Sbjct 36296 CATCGATGTAATCTTGCCCATGGTAGGCTCCTTCATGTGAATGTTGAGCGACTGGGACTG 36355 Query 115668 ATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTG---ATTTC 115724 |||||||||| || || || || ||||| | ||| | | | | || | ||||| Sbjct 36356 ATCGATGAAGGCGCCACGGTCAGCGGCCATCTGAATGA--TGGTACG-CTGGGAGATTTC 36412 Query 115725 CCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATAGA 115784 |||||| || |||| || ||| || ||||| || || | || | ||||| || Sbjct 36413 CCACACGGTCTTGTATAGCGCCTTGATTTCATCGGGAATGTTAGGAATCCTCTGGATGGA 36472 Query 115785 GCCACCTGCCTTGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTCTTGAG 115844 ||||| | || ||| | | |||||| | | ||||| || || || | | Sbjct 36473 ACCACCATCGGCGATGATGCGGTTCTTCATGTTGTCAGACCACAGGCCCATGTCAACCAA 36532 Query 115845 ATCCTCCACGAGGTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATA 115904 ||||| || ||| ||||| || ||||| || || | || | || Sbjct 36533 ATCCTTCAGGAGCCAGGGGTTGACGACCTGGAACTCGCCGGCCAAAACACGGCGGGAGTA 36592 Query 115905 GATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGA-TTTGGGCTGTGGAGG 115963 |||||||| || ||||| || ||||| ||||||| | |||||| |||||| |||||||| Sbjct 36593 GATGTTGGAGGTATATGGTTCGAAGCATTCATTGT-AGCCAAGAATTTGGGATGTGGAGG 36651 Query 115964 CTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCT 116023 | || |||||||| || | || || |||||| | ||| | || | ||| Sbjct 36652 CAGTAGGCATGGGGGCAACAAGCAGCGAGTTGCGAACACCATGCTGTGCGATCTTTGCCT 36711 Query 116024 TGAGGGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGGAGGA 116083 |||| || |||||||| || | | | | | |||||||||| | || || | Sbjct 36712 TGAGAGCATCCCAGTCCCAGAGGTCGGTGGGCGTGATATTCCACATATCATATTGAAGTA 36771 Query 116084 TACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATT 116143 | || || || | || || ||||| | || |||||||| || ||| |||| | Sbjct 36772 TGCCCTGCGAGACAGGAGAGCCCTCGTAAGTTTCATATGGACCAAGTTCCTTGGCCAGAT 36831 Query 116144 CGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCAT-TGCC 116202 || | || ||| || ||||| || || |||||||| || | | || | | || Sbjct 36832 CGCAAGACGATGTGAGAGCAGCGTGGTAGATGGTCTCAAAGATCTGGGTGTTGAGCTTCC 36891 Query 116203 TTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAGACCTTGG 116262 ||| | ||| || || || | || || | || ||||||| ||||| ||| Sbjct 36892 TTG-CTTCGGGAGAGTCGAAGGGCAGGCGCAGGGCGAGGAAGGCATCCGCAAGACCCTGG 36950 Query 116263 ACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGGATAA 116322 || || || || | || | ||||| | || || ||||| || || || Sbjct 36951 ACTCCAAGACCGACAGGCCTGTGTCTGAAGTTGCTGTTGCGAGCTTCAGGAACCGGGTAG 37010 Query 116323 AAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGC 116382 ||| ||||||| | | || ||||| ||||| |||| || ||| || ||| Sbjct 37011 TGATTGACCTCGATAATCTTGTTCAGATTACGAGTGACGACCTGGACGACTTCGTGGAGC 37070 Query 116383 TTTTCGTAATCAAAACTGCGA-GTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGC 116441 || | | ||||| | || | || | | | |||||| ||| || || | || || Sbjct 37071 TTCTGGAAATCATACTCGCCACGTTGCATG-TCCACATACGCAGGGAGTGCAAGCGAGGC 37129 Query 116442 CAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATT 116501 || || || || | |||||| | |||||||| || || || || || | || Sbjct 37130 CAAGTTGCAGACGGCAACCTCATCGGGTGCGGTGTACTCAATGATCTCGGTGCAGAGGTT 37189 Query 116502 TGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTG-TTACACGCATCCTTGT 116560 || || ||| || || | |||||| || || | |||| | || || |||||||||| Sbjct 37190 AGAGCTGCGAATAGTTCCGAGGTTCTTCTGGTT-GCTTTTGCGGTTGCATGCATCCTTGT 37248 Query 116561 AGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATA-CATCG 116619 |||||||||| || | || ||||| || |||| || ||| || || | ||| | | || Sbjct 37249 AGAGCATATACGGGTTTCCAGTCTCGGTCTGGGCCTCGAGGATGGCGTACCAGAGCTTCT 37308 Query 116620 GCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTG-TAGAGGGCCTC 116678 | ||| ||||||| | | || ||||| |||| ||| ||||| || || |||| Sbjct 37309 G-GGCGCGCACAGTCTCTCGTCCGCGTCCCTCGGCCTCATAC-TTGTGATACAGCTCCTC 37366 Query 116679 AAACTCTTCACCCACAG-CCTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGACC 116737 ||||| || ||| || | || | | ||| || || | | || ||||| |||| || Sbjct 37367 GAACTCGTC-GCCATAGACGTCGGCCAACCCAGGGGCTTCGTTCGGGCAGAAAAGAGTCC 37425 Query 116738 ATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGA 116797 | | ||| |||| |||||||||||||||||||| || ||||| || || |||| | Sbjct 37426 ACTCTCCATTATCCTGGACCCGCTTCATGAAGAGGTCAGGAATCCACAGAGCGTAGAACA 37485 Query 116798 GATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGA 116857 ||| || ||| ||||| | || || || || | || | ||| | | || Sbjct 37486 AATCACGGGCGCGGATCTCTTCCTTGCCATGGTTCTTGCGAAGATCAAGGAAGCCAAAGA 37545 Query 116858 TATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCG---ACGACCAGCCT 116914 ||| |||||||| || || ||||| | |||| | || ||| | ||| ||| Sbjct 37546 CATCGGCGTGCCATGGCTCGAGGTAGATGGCGAAAGCACCTGGGCGCTTATTGCCACCCT 37605 Query 116915 GGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCAGATT 116974 ||| ||||| | || || |||| | || |||||||| || |||| || | || Sbjct 37606 GGTCGACATAACGAGCGGTGTTGTTATAGACACGAAGCATAGGGATGAGGCCGTTGGACG 37665 Query 116975 GGCCATTTG-TCCCCCGA-ATACGAGACTTGTTGGCTCTGACATCGTGGATGTGCATACC 117032 || || | ||| |||| || ||| | | |||| | || || | | | ||| Sbjct 37666 TTCCGTTCGTTCCACCGATGTATGAGCC--GGTGGCACGGATGCGATGAACATTGAGACC 37723 Query 117033 AATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATC 117092 |||||| || || ||| ||||| |||||| | | || || ||||||| || || Sbjct 37724 AATACCGCCAGCGGTCTTGGAGATCATAGCGCACGTCTTCAGCGTGTCGTAGATGCCTTC 37783 Query 117093 GATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACC 117152 ||| |||| |||| | |||||||||||||| ||||| ||||| | ||||| || Sbjct 37784 GATGCTGTCATCCTTGATATCGATGAGGAAGCAGGAGGACATCTGTGGGTTGGGTGTTCC 37843 Query 117153 AGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCTTATCGTAGG 117211 |||||||| || ||||| | |||||| |||| || | | |||||| | | ||| | Sbjct 37844 GGCGTTGAAAAGCGTTGGAGACGCGTGTGTGAA-GTATTTGTTGGACATGTAGTTGTATG 37902 Query 117212 TCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCATAAACATGT 117271 |||| | | | |||||||| ||||| || || | | || ||||| | ||||| Sbjct 37903 TCTCGATGGCCTTCTCGATGTCTTCGCCGTGGATGCCAACGGCTACACGCATGAGCATGT 37962 Query 117272 ATTGGGG 117278 ||| || Sbjct 37963 GTTGTGG 37969 >seq46 Length=404262 Score = 138 bits (152), Expect = 1e-27 Identities = 309/455 (68%), Gaps = 12/455 (3%) Strand=Plus/Minus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 ||| || ||||||| ||||||||||||||||||||| || | || ||| |||||||| Sbjct 338079 GTAATCACCGACCCTCTTCTCGAAGAAGTTTGTCTTACCGGCCAGCGAGATGTTCTCCAT 338020 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCA-AATTGTTGGCACCCCA-ATCTGTTTGAGGAGA 127348 || || || ||||| | | ||| | || | |||| || | | | ||| || Sbjct 338019 GAAGTCGAAGGGGTTGGTGGCGTTGTAGAACTTTTGGTTGCCGAGAGCCAA--GAGCAGG 337962 Query 127349 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTA 127408 || || | |||| |||| ||||||| |||| || |||||||| |||| || | Sbjct 337961 CGGTCGGCGACGAACTCGATGTACTGGCACATGAGCTTGGAGTTCATGCCGAGAAGAGCA 337902 Query 127409 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCG 127468 || || || || || || |||| | | ||| ||| |||||||| | |||||| Sbjct 337901 CACGGTAGAGCTTCTGTGAGGAACTCTTGCTCGATGGTGACAGCTTCGGTGATGATGGCC 337842 Query 127469 T-GAATAG--TGTCCACCCCAGGTCTATTGCGTAAAGTCTTGAAGAGTTC-CACAGCAAA 127524 | || | | | | | | || | ||| | | || ||||||| ||| || || Sbjct 337841 TCGACTTCCTTTTGCGACGGACGTGTGTTGAGGAGAGA---GAAGAGTAGGCAC-GCGAA 337786 Query 127525 CTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCAT 127584 || ||| | ||||||||||| || |||||||| || |||||| || || ||||| Sbjct 337785 GTCGGTGTGCATGCCCTCGTCACGAGATATGAGTTCGTTGGAGAAGGTGAGGCCGGGCAT 337726 Query 127585 GAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTC 127644 ||| || ||||||||||||||||| || | || || || ||||||||||| || || Sbjct 337725 GAGGCCGCGCTTCTTCAACCAGAAGATGGACGCGAAGGAACCGGAGAAGAAGATGCCTTC 337666 Query 127645 CACACACGCGAACGCAAATAGACGCTCGGCAAAGG 127679 || ||||| |||| || || | ||||||| Sbjct 337665 TACGGCGGCGAAGGCAACGAGGCGGTTCGCAAAGG 337631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613501364012760