Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Clohesyomyces_20aquaticus_20[genbank_20GCA_5F002105025.1_202017-04-
20] 761 sequences; 49,677,730 total letters
Query= NC_013756.1
Length=368454
Score E
Sequences producing significant alignments: (Bits) Value
seq412 129 1e-24
seq11 102 2e-16
seq738 100 7e-16
>seq412
Length=249799
Score = 129 bits (142), Expect = 1e-24
Identities = 154/209 (74%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
|| || | ||| |||||||||||||| |||| ||||||||| | | || | || ||
Sbjct 4087 AGCACCAAGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTTCGGCCGTCC 4146
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|||| |||||| || || ||||||||||| ||||||||||| ||| || ||| |||
Sbjct 4147 TCCAACTGCTTACCAGCAAAGATGAGACGTTGCTGGTCCGGGGGAATACCCTCTTTATCC 4206
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| ||||| ||||||| |||| ||||| | | || || || | ||||||||||
Sbjct 4207 TGGATCTTGGACTTCACGTTGTCGATTGTGTCGGACGACTCAACCTCTAGCGTGATCGTC 4266
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || ||||| || || || || || ||
Sbjct 4267 TTGCCGGTGAGTGTCTTGACGAAGATCTG 4295
Score = 125 bits (138), Expect = 2e-23
Identities = 159/219 (73%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467
||| || | ||| || | |||||| || ||||| || |||| ||||||||| | || ||
Sbjct 4305 TCGCAGACGCAGAACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGT 4364
Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527
| |||||||| |||||||| ||||||||||||||||||||||| ||||| ||| ||
Sbjct 4365 GCGGCCATCTTCAAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCCGGGGGAATGCC 4424
Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587
|| |||||||| ||| || ||| |||| ||| || | | || || || |
Sbjct 4425 CTCCTTATCCTGAATTTTTGATTTGACGTTGTCGATGGTATCGGACGACTCCACCTCGAG 4484
Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| ||||| || || || || || || || || ||
Sbjct 4485 GGTGATAGTCTTGCCGGTCAGGGTCTTGACGAAGATCTG 4523
Score = 95.1 bits (104), Expect = 3e-14
Identities = 135/190 (71%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
||||| || ||||| || |||||||| || | ||||||||| | || || | |||||
Sbjct 4543 AGGACGAGATGGAGCGTGGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCATCC 4602
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|| |||||||| ||||||||||| | ||||| ||||| || || || || |||
Sbjct 4603 TCGAGCTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCTGGGGGGATGCCCTCCTTATCC 4662
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| ||||| || ||| |||| ||| || | | ||| || || | || || |||
Sbjct 4663 TGGATCTTCGATTTGACGTTGTCGATGGTATCGCTCGATTCGACCTCAAGGGTAATGGTC 4722
Query 199598 TTACCCGTGA 199607
||||| ||||
Sbjct 4723 TTACCGGTGA 4732
>seq11
Length=137347
Score = 102 bits (112), Expect = 2e-16
Identities = 83/101 (82%), Gaps = 0/101 (0%)
Strand=Plus/Plus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
||||| ||||| || ||||||||||| |||| ||||||||| | | || | || |||
Sbjct 124729 AGGACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCT 124788
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518
|| |||||||||||||||||||| |||||||| ||||| ||
Sbjct 124789 TCGAGCTGCTTTCCGGCGAAGATCAGACGCTGTTGGTCTGG 124829
>seq738
Length=174967
Score = 100 bits (110), Expect = 7e-16
Identities = 99/128 (77%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
|| || | ||| |||||||||||||| |||| ||||||||| | | || | |||||
Sbjct 25244 AGCACCAAGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCC 25303
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|| |||||||| ||||||||||| | |||||| |||||||| ||| || || |||
Sbjct 25304 TCGAGCTGCTTGCCGGCGAAGATCAAACGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCC 25363
Query 199538 TGAATCTT 199545
||||||||
Sbjct 25364 TGAATCTT 25371
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1178910105145987
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |