Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Clohesyomyces_20aquaticus_20[genbank_20GCA_5F002105025.1_202017-04-
20] 761 sequences; 49,677,730 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq412 131 2e-25
seq738 109 6e-19
seq11 98.7 1e-15
>seq412
Length=249799
Score = 131 bits (144), Expect = 2e-25
Identities = 140/185 (76%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444
|| ||||||| || |||||| ||||| ||||||||||| ||||| || | || |||
Sbjct 4829 ACGAGATGCAGAGTTGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGTCCATCCTCG 4888
Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504
||||||||||| ||||| ||||||||||| ||||| | ||| | || ||||| ||| |
Sbjct 4889 AGCTGCTTGCCTGCGAAAATCAAGCGCTGTTGGTCAGGCGGGATGCCTTCCTTATCCTGG 4948
Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564
|||||| ||||| | | | |||||| || ||||| |||| |||||||| |||
Sbjct 4949 ATCTTCGACTTGACATTGTCAATCGTGTCCGAGGACTCCACCTCCAAGGTGATGGTCTTG 5008
Query 46565 CCCGT 46569
|| ||
Sbjct 5009 CCGGT 5013
Score = 118 bits (130), Expect = 1e-21
Identities = 129/169 (76%), Gaps = 2/169 (1%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| || || ||||||||||| || ||||| | || ||||||||||||||||||||
Sbjct 4563 CTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAA 4622
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
||||| ||||| ||||| | || | || |||||| ||| ||||||| |||| |||
Sbjct 4623 GATCAATCGCTGTTGGTCTGGGGGGATGCCCTCCTTATCCTGGATCTTCGATTTGA-CGT 4681
Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGT 46569
| | | || ||||||||||| || || | || ||||| || || ||
Sbjct 4682 TGTCGATGGTATCGCTCGATTCGACCTCAAGGGTAATGGTCTTACCGGT 4730
Score = 109 bits (120), Expect = 6e-19
Identities = 142/194 (73%), Gaps = 2/194 (1%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
||| || ||||| ||||||||||| || ||||| | || || |||||||||||||||||
Sbjct 4335 CTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCGAA 4394
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|| | |||||||| || | || | || |||||| ||| ||| || | || |||
Sbjct 4395 GATGAGACGCTGCTGATCCGGGGGAATGCCCTCCTTATCC-TGAATTTTTGATTTGACGT 4453
Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580
| | | || ||| ||| ||||| || | ||||| || ||||| ||||| || || |
Sbjct 4454 TGTCGATGGTATCGGACGACTCCACCTCGAGGGTGATAGTCTTGCCGGTCAGGGTCTTGA 4513
Query 46581 CAAAGATTTGCATT 46594
| ||||| ||||||
Sbjct 4514 CGAAGATCTGCATT 4527
>seq738
Length=174967
Score = 109 bits (120), Expect = 6e-19
Identities = 108/140 (77%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437
||| | ||||| |||| || |||||| ||||| ||||||||||| || ||||| |
Sbjct 25240 ACGGAGCACCAAGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCC 25299
Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497
|| |||||||||||||||||||| ||||| ||||| ||||| | || | || ||||||
Sbjct 25300 ATCCTCGAGCTGCTTGCCGGCGAAGATCAAACGCTGTTGGTCCGGGGGAATGCCCTCCTT 25359
Query 46498 GTCCATGATCTTCTTCTTGA 46517
|||| ||||| |||||
Sbjct 25360 GTCCTGAATCTTGGACTTGA 25379
>seq11
Length=137347
Score = 98.7 bits (108), Expect = 1e-15
Identities = 81/99 (82%), Gaps = 0/99 (0%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| ||||||||||| || ||||| |||| ||||||||||| ||||||||
Sbjct 124749 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCTTCGAGCTGCTTTCCGGCGAA 124808
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 46500
|||| ||||| ||||| | || | || |||||||||
Sbjct 124809 GATCAGACGCTGTTGGTCTGGGGGAATGCCCTCCTTGTC 124847
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565233023169720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |