Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clohesyomyces_20aquaticus_20[genbank_20GCA_5F002105025.1_202017-04- 20] 761 sequences; 49,677,730 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq46 215 5e-51 seq412 136 4e-27 seq738 111 2e-19 seq11 102 8e-17 >seq46 Length=404262 Score = 215 bits (238), Expect = 5e-51 Identities = 216/277 (78%), Gaps = 5/277 (2%) Strand=Plus/Minus Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 |||||| ||||| | | ||| || |||||||||| | ||||||||| ||| || || Sbjct 337466 GTAGGTATCGATCAAGAGCGAGTATGTTTCCGAGTGGATGTTCTCCATCATGATCTGGAA 337407 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAA-CGCTCGACCAGAT 133285 |||||| ||||| ||||||||| ||| ||||| ||| || ||| ||||||||||| | Sbjct 337406 GCCGTAGAAGCATCGCGCCTCGGGCACTTGCACCTCTCC-GCTAAAGCGCTCGACCAGGT 337348 Query 133286 TTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGC 133345 | |||||||||||||||||| ||||||||| ||||| || ||||| |||||| || Sbjct 337347 TCTCGTTGACGATGCCGTCGGAGGCGGCGAAGAAGGCGAGGACGTGGGAGATGAAGAAGC 337288 Query 133346 GCTCGTTGTCGTTCAAGCGC---TCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCT 133402 |||||| ||||||||| ||| | ||||||| | ||| ||||| || || | ||| | Sbjct 337287 GCTCGTCGTCGTTCAATCGCTTGTTCCAGTCGTGGAGGTCTTTGGAGAGATCGATCTCTT 337228 Query 133403 CGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 || |||||||||| || || ||||| || |||||||| Sbjct 337227 CGGCGGTCCAAAAAGAGGCTTCGGCCTTCTTGTACAT 337191 Score = 187 bits (206), Expect = 2e-42 Identities = 348/505 (69%), Gaps = 16/505 (3%) Strand=Plus/Minus Query 132604 TTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGC 132663 || || || || || ||| | ||||| || || || || || || ||| || ||| | Sbjct 338084 TTCTGGTAATCACCGACCCTCTTCTCGAAGAAGTTTGTCTTACCGGCCAGCGAGATGTTC 338025 Query 132664 GTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTT---GGTGCCGATCAGGTCGACG 132720 ||| || || |||||||||| | ||||||| ||| | |||||| || | | | Sbjct 338024 TCCATGAAGTCGAAGGGGTTGGTGGCGTTGTAGAACTTTTGGTTGCCGAG-AG--CCAAG 337968 Query 132721 AGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGC 132780 ||||| | |||||| |||||||||||||| || ||||| | | | || | || || Sbjct 337967 AGCAGGCGGTCGGCGACGAACTCGATGTACTGGCACATGAGCTTGGAGTTCATGCCGAGA 337908 Query 132781 AGACGCAC-CGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGAC 132839 ||| |||| ||| || ||||| ||||| || ||||||||||| ||| || ||||||| Sbjct 337907 AGA-GCACACGGTAGAGCTTCTGTGAGGAACTCTTGCTCGATGGTGACAGCTTCGGTGAT 337849 Query 132840 GATTTCCCTAACGCGC----GCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGC 132895 ||| || || | || || || |||| | | ||| | | || Sbjct 337848 GATGGCCTCGACTTCCTTTTGCGACGGACGTGTGTTG----AGGAGAGAGAAGAGTAGGC 337793 Query 132896 AAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGC 132955 | || |||||| |||| ||||||||| | || |||||||||||| ||| || | || Sbjct 337792 ACGCGAAGTCGGTGTGCATGCCCTCGTCACGAGATATGAGTTCGTTGGAGAAGGTGAGGC 337733 Query 132956 CGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGA 133015 |||||||||||||||| || || | ||| || |||| ||||| || || ||||||| Sbjct 337732 CGGGCATGAGGCCGCGCTTCTTCAACCAGAAGATGGACGCGAAGGAACCGGAGAAGAAGA 337673 Query 133016 CGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGA 133075 ||| || ||||| ||||| || || ||||| | | || || | | |||| | || Sbjct 337672 TGCCTTCTACGGCGGCGAAGGCAACGAGGCGGTTCGCAAAGGTCGAGTTTTTGTCTGAGA 337613 Query 133076 TCCAGCGCAGCGCCCATTCGGCCTT 133100 |||| || || ||||| |||||||| Sbjct 337612 TCCACCGGAGAGCCCAGTCGGCCTT 337588 >seq412 Length=249799 Score = 136 bits (150), Expect = 4e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || ||||| || || || || ||||| || |||||| |||| || ||| | | Sbjct 4527 AATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACTATCACCCTCGAGGTGGAGTCGTC 4468 Query 38303 CGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 ||| | | | | |||| | ||| |||||| | || || ||||| |||||| | || | Sbjct 4467 CGATACCATCGACAACG-TCAAATCAAAAATTCAGGATAAGGAGGGCATTCCCCCGGATC 4409 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| ||||| | ||| ||||| ||||| || || | |||||||| |||||||| Sbjct 4408 AGCAGCGTCTCATCTTCGCCGGCAAGCAGCTTGAAGATGGCCGCACCCTGTCCGACTACA 4349 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||| || || | || || || ||||| |||||| || |||| || Sbjct 4348 ACATCCAGAAAGAGTCCACCCTCCACTTGGTTCTGCGTCTGCGAGGTGG 4300 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| ||||| || ||||| | || || ||| | || Sbjct 4298 ATGCAGATCTTCGTCAAGACACTCACCGGCAAGACGATCACGCTAGAGGTTGAGTCGTCC 4239 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | || || |||| || |||||||| |||||| | ||||| Sbjct 4238 GACACAATCGACAACG-TGAAGTCCAAGATCCAGGATAAAGAGGGTATTCCCCCGGACCA 4180 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || ||||| | || || || ||| |||| |||| || || ||| |||||||| Sbjct 4179 GCAACGTCTCATCTTTGCTGGTAAGCAGTTGGAGGACGGCCGAACGCTCTCGGACTACAA 4120 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| |||| ||||| |||||||| ||| | | ||||| Sbjct 4119 CATCCAGAAGGAGTCGACTCTGCACTTGGTGCTCCGTCTCCGTGGCGG 4072 Score = 93.3 bits (102), Expect = 4e-14 Identities = 139/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 38266 TCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAA 38324 |||| || || ||||| ||| | || ||||| | | ||| | | | | |||| | ||| Sbjct 4732 TCACCGGTAAGACCATTACCCTTGAGGTCGAATCGAGCGATACCATCGACAACG-TCAAA 4674 Query 38325 GAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGC 38384 || |||| || || ||||| || ||| | ||||||||||| | || | ||| ||| Sbjct 4673 TCGAAGATCCAGGATAAGGAGGGCATCCCCCCAGACCAACAGCGATTGATCTTCGCCGGC 4614 Query 38385 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTG 38444 || ||||| || || | |||||||| |||||||||||| || ||||| | ||||| Sbjct 4613 AAGCAGCTCGAGGATGGCCGCACCCTGTCCGACTACAACATTCAGAAGGAGTCCACGCTC 4554 Query 38445 CATTTGGTGCTGCGT 38459 ||| | || || ||| Sbjct 4553 CATCTCGTCCTCCGT 4539 Score = 91.5 bits (100), Expect = 1e-13 Identities = 141/196 (72%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 38266 TCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACA-GCGTGCAAACGCTTAAA 38324 |||| ||||| ||||||||| | || || ||| || | |||| | || || | | || Sbjct 5015 TCACCGGCAAGACCATCACCTTGGAGGTGGAGTCCTCGGACACGATTGACAATG-TCAAG 4957 Query 38325 GAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACCAACAGCGGCTCATTTACGCGGG 38383 || |||| || || || || || |||||| ||||||||||| | |||| ||| || Sbjct 4956 TCGAAGATCCAGGATAAGGAAGGCAT-CCCGCCTGACCAACAGCGCTTGATTTTCGCAGG 4898 Query 38384 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCT 38443 ||| ||||| || || | || || || ||||||||||||||| ||||| | || || Sbjct 4897 CAAGCAGCTCGAGGATGGACGTACTCTGTCCGACTACAACATCCAGAAGGAGTCAACTCT 4838 Query 38444 GCATTTGGTGCTGCGT 38459 |||| | || || ||| Sbjct 4837 GCATCTCGTCCTTCGT 4822 >seq738 Length=174967 Score = 111 bits (122), Expect = 2e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396 ||||| ||||| |||||| | ||||||||||| | || | ||| ||||| ||||| || Sbjct 25362 GACAAGGAGGGCATTCCCCCGGACCAACAGCGTTTGATCTTCGCCGGCAAGCAGCTCGAG 25303 Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 || | |||||||| ||||||||||||||| ||||| |||| ||||| |||||||| Sbjct 25302 GATGGCCGCACCCTTTCCGACTACAACATCCAGAAGGAGTCGACTCTGCACTTGGTGCTC 25243 Query 38457 CGTTTGAGAGGCGG 38470 ||| | | ||||| Sbjct 25242 CGTCTCCGTGGCGG 25229 >seq11 Length=137347 Score = 102 bits (112), Expect = 8e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396 ||||| ||||| |||||| | ||||||||||| || || | ||| || || ||||| || Sbjct 124847 GACAAGGAGGGCATTCCCCCAGACCAACAGCGTCTGATCTTCGCCGGAAAGCAGCTCGAA 124788 Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 |||| ||||||||| ||||||||||||||| ||||| |||| || || | || || Sbjct 124787 GACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCGACCCTTCACCTCGTCCTC 124728 Query 38457 CGTTTGAGAGGCGG 38470 ||| || | || || Sbjct 124727 CGTCTGCGTGGTGG 124714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500168042106240