Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clohesyomyces_20aquaticus_20[genbank_20GCA_5F002105025.1_202017-04- 20] 761 sequences; 49,677,730 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq235 212 8e-50 seq112 127 3e-24 seq24 122 1e-22 seq712 114 2e-20 seq634 87.8 2e-12 >seq235 Length=294990 Score = 212 bits (234), Expect = 8e-50 Identities = 459/675 (68%), Gaps = 20/675 (3%) Strand=Plus/Minus Query 7404 CTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTG-TCGA-AGGAGTCTCGAATCGAA 7461 |||| || ||||||||||| || || | || |||||| | || | || | | || || Sbjct 28073 CTTTTTTGTGTTTACGTTTGAATTCGTTAGTGAAGTGGTTGACAAGACGGTTG--TCAAA 28016 Query 7462 ATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTC 7521 || || || ||||| ||||| || || ||||||| ||||| || |||||||| | || Sbjct 28015 GTCCTCTCCTCCCAAATGTGTGTCACCGGCGGTCGACTTGACCTCGAAGATACCCTCCTC 27956 Query 7522 AATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTT-CG 7580 ||| | | || || ||||| || |||||||| || || || || ||||| ||||| || Sbjct 27955 AATTGTGAGCAGAGACACATCGAAGGTACCACCTCCGAGATCGAAGATGAGCACGTTGCG 27896 Query 7581 TATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAA 7640 | ||| | | ||||| || |||||||| || || || || || || || || |||| Sbjct 27895 T-TCGCCAGTAGTCTTCTTGTCAAGACCGTAGGCAATGGCAGCGGCAGTGGGCTCGTTAA 27837 Query 7641 TAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCG 7700 | || || || ||||||||||||||| | ||||| || || || || || || | Sbjct 27836 TGATTCGGAGCACGTTCAGGCCAGCAATCAGACCAGCATCCTTGGTAGCCTGGCGCTGAG 27777 Query 7701 AATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACG 7760 | ||||| |||||||| ||||| || ||||| |||| | || | || || || | Sbjct 27776 AGTCGTTGAAGTAGGCAGGGACGGTGACGACAGCGTTGTTCACGGTGCCGCCAAGGTATG 27717 Query 7761 ATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACT 7820 | || || | || |||| || |||||||| ||||| ||||| || | | || Sbjct 27716 ACTCGGCCGTTTCCCTCATCTTCACGAGAACCATGGATGAGATCTCCTCGGGTGTGAA-A 27658 Query 7821 GTTTCGT-TTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACC---GGGG 7876 || | || || || || || || || | || | || || || |||| | | Sbjct 27657 GTCTTGTCCTCTCCCTTGAACTCGACCTGGATGACTGGCTT----GC--CACCCTTGTCG 27604 Query 7877 ATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTT 7936 || ||||| | | | | ||||| ||| | || |||| ||| | ||||| | Sbjct 27603 ATGACCTTGAAGGGGAAGTGCTTCATGTCGGCCTGCACCTCAGCGTCGGCGAACTTGCGG 27544 Query 7937 CCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTC 7996 || || |||||||| ||||| || || ||||| ||||||||| || |||||||||| Sbjct 27543 CCAATGAGACGCTTGGCATCGAAGACAGTGTTGGCGGGGTTCATAGCGACTTGGTTCTTC 27484 Query 7997 GCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTT 8056 || | ||| ||||| ||||| || || || || || || ||| | ||||| || Sbjct 27483 GCAGAGTCTCCGATGAGACGCTCCGTA---TCGGTGAAGGCCACGAAACTCGGGGTGGTG 27427 Query 8057 CGATTCCCTTGGTCG 8071 || || || |||||| Sbjct 27426 CGGTTACCCTGGTCG 27412 Score = 167 bits (184), Expect = 3e-36 Identities = 538/829 (65%), Gaps = 7/829 (1%) Strand=Plus/Minus Query 6569 TCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGAT 6628 ||||| ||| | || ||||| || || || | ||| ||||| || || || || Sbjct 28969 TCATCCTCAGCCTTGTACTTCTCGGCTTCCGCCAACATGCGCTCAATCTCCTCCTTGGAC 28910 Query 6629 AATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCA 6688 | | ||||| || || || || |||||| | || || || | |||| || | Sbjct 28909 AGACGGCCCTTGTCGTTGGTGATGACAATCTTGTTGGTCTTTCCGGTACCCTTCTCGAGA 28850 Query 6689 GCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTA 6748 ||| || ||| || || || ||||||| |||||| | || | ||| || || | Sbjct 28849 GCAGAGACGCTCATGATGCCGTTAGCATCAAGATCGAAGGTGACCTCAATCTGGGGAACA 28790 Query 6749 CCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTC 6808 || | ||| || | ||| || || || | || ||| | || | | |||| ||| | Sbjct 28789 CCACGCGGCGCAGGTGGGATGCCAGTGAGCTCGAATTTGCCCATGAGGTTGTTGTCCTTG 28730 Query 6809 GCCTTCTT--ACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTG 6866 | ||| | ||| ||||| || ||||| | ||| ||| | || || || || Sbjct 28729 G--TTCGTGCACGCTCACCCTCGTAGACCTGAATGAGCACACCGGGCTGGTTGTCGCTGA 28672 Query 6867 CCGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGG 6926 || ||||||| | | ||||| | ||||| || || || | | || | || | Sbjct 28671 AGGTGGAGAAGACCTCTGACTTCTTCGTGGGAATGGTGGTGTTGCGCTTGATCAGAGGAG 28612 Query 6927 TCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACA 6986 |||| | |||||| || || | ||||| |||| || | |||||||| || || | Sbjct 28611 TCATGACACCACCAGCGGTCTCAATACCAAGGGACAATGGGGCGACGTCCAAAAGCAAGA 28552 Query 6987 GGTCTTGAACAGA-TTCGTTCCCTTCAC-CCGTTAAGA-TGGCGGCTTGGACCGTCGCCC 7043 || | || || | | | ||| |||| | || || ||||| | || | Sbjct 28551 TCTCGTTGGTGGACTTGGAGGAGGTGTCGCCGGAAAGAATAGCAGCCTGGACGGCAGCAC 28492 Query 7044 CGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAAT 7103 |||| || || |||||||||||||| || | || || | || || ||||| || | | Sbjct 28491 CGTAGGCAACAGCCTCATCGGGGTTGATGGACTTGTTGGGCTCCTTGCCGTTGAAGAAGT 28432 Query 7104 CCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCAT 7163 | || | ||| | || || || ||||| || || ||||| |||||||||||||| || | Sbjct 28431 CGGAGACCATCTTCTGGATCTTGGGGATACGGGTGGATCCTCCGACCAAAACGATCTCGT 28372 Query 7164 TCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATT 7223 || || || |||||||| | ||| || || ||||| |||||||| Sbjct 28371 GAACGGAAGACTTGTCGATCTTGGCGTCGCGGAGGACACGCTCGACTGGTTCCATGGTGG 28312 Query 7224 TACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAAT 7283 ||||| | |||| || || || || || | |||||||| ||||| |||||||| | Sbjct 28311 ATCGGAAGAGGTCCTGGCAGAGCTCTTCGAACCTAGCACGGGTGATGGAGGTATAGAAGT 28252 Query 7284 CAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTC 7343 ||| || ||| | | ||| || || || |||| || || || | || || || || | Sbjct 28251 CAATTCCTTCGAAGAGCGAGTCGATCTCGATGGACGTCTGAGCAGAGGAGGACAAGGTAC 28192 Query 7344 GCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTT 7392 |||| || ||||| || || ||||| | ||| || |||||||| | ||| Sbjct 28191 GCTTGGCCCGCTCGCATGCGGTTCGGAGACGTCGGAGGGCACGGGCGTT 28143 >seq112 Length=657780 Score = 127 bits (140), Expect = 3e-24 Identities = 224/324 (69%), Gaps = 3/324 (1%) Strand=Plus/Plus Query 7435 GAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGT 7494 |||||| ||| || | | ||||||||||| |||||||| || || || || ||||| Sbjct 111690 GAAGTGGTCAAGAAGGTTGGTATCGAAATCTTGACCACCCAGATGAGTGTCACCAGCGGT 111749 Query 7495 CGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACC 7554 || ||||| |||| ||| || | |||| | | || ||||| || |||||||| Sbjct 111750 AGCCTTGACAGTGAAGACACCACCCTGGATGTGAAGAAGGGACACATCGAAAGTACCACC 111809 Query 7555 ACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTT--CTTAT-CGAGACCGTA 7611 |||| || | ||||| || ||| | || | || || | || | |||||||| Sbjct 111810 TCCCAAATCGTAGATGAGAACATTCCTCTCCTTCTCAGACTTGCCGGATCCAAGACCGTA 111869 Query 7612 CGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGT 7671 ||||| || || || || || || || |||||||| || ||| ||||| ||||| | Sbjct 111870 TGCGATGGCGGCGGCGGTAGGCTCGTTGATAATACGGAGGACGTTGAGGCCGGCAATGGC 111929 Query 7672 TGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGAC 7731 | ||||| || || |||||||| || ||||| || ||||| || || || || || Sbjct 111930 ACCGGCATCCTTGGTGGCTTGTCGCTGGTTGTCGTTGAAATAGGCGGGAACTGTGACAAC 111989 Query 7732 CGCGTCCGTGACTTTCTTACCGAG 7755 || | | ||| ||||| ||||| Sbjct 111990 GGCCTTCTCGACCTTCTTGCCGAG 112013 >seq24 Length=408599 Score = 122 bits (134), Expect = 1e-22 Identities = 244/359 (68%), Gaps = 6/359 (2%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||||||||||||||| | || || || || ||||| | || ||| || || | || Sbjct 326339 TCGAAATCTTCACCACCGAGATGGGTGTCACCAGCGGTAGATTGGACCTCGAACACGCCG 326280 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAA---AATGAGT 7573 |||||||| | | | || ||||| || || ||||| || || || | ||||| | Sbjct 326279 TCTTCAATGGTCAGGATGGAGACATCGAAAGTTCCACCTCCGAGATCGTAGACAATGACT 326220 Query 7574 A--CGTTCG-TATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTT 7630 || ||| | | |||| | | |||| ||||| || || || | || ||||| || Sbjct 326219 TGGCGCTCGCTCTTGTCGGTCTCGGTCTTGTCGAGGCCATAAGCCAGGGCGGCCGCGGTG 326160 Query 7631 GGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCT 7690 || || || | | ||| ||| || || || || || || | || || || || || Sbjct 326159 GGCTCGTTGACCACACGGAGAACATTGAGACCGGCGATGGTGCCAGCGTCCTTGGTGGCG 326100 Query 7691 TGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTA 7750 || || | ||||| ||||||||||| ||||| || || |||| | |||| ||| | Sbjct 326099 GCACGCTGAGCGTCGTTGAAGTAGGCCGGAACCGTAACAACGGCGTTCTTGACCGTCTCA 326040 Query 7751 CCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTC 7809 |||||||| || |||| || ||||| ||| | |||||| | |||||||| || Sbjct 326039 CCGAGATAGCTCTCGGCGACCTCCTTCATCTTGCCCAAAACCATGGCGGAAATCTCCTC 325981 >seq712 Length=182452 Score = 114 bits (126), Expect = 2e-20 Identities = 224/327 (69%), Gaps = 8/327 (2%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||||||||||||||| | || || || || ||| | ||||| || |||| ||| Sbjct 54126 TCGAAATCTTCACCACCGAGATGGGTGTCGCCGTTGGTGGACTTGACCTCGAAGACACCG 54067 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 ||| || | | | || | |||||| |||||||| || || || | | || | Sbjct 54066 GCTTGGATCTCAAGAATGGAGATATCAAAGGTACCACCTCCGAGATCGTAGAC-AGCAA- 54009 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 | ||| ||| || ||| ||||||||||| || | ||| || || || || || Sbjct 54008 ----TGACGTTGTCGCTGGACTTGTCGAGACCGTAGGCAAGAGCGGCTGCGGTCGGCTCG 53953 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCC-GCATCTTTCGTCGCTTGTCG 7695 |||| | |||||| ||| || || || || | ||| || || || || ||||| || Sbjct 53952 TTAACCACACGAAGGACGTTGAGACCGGCGAT-CTGGCCGGCGTCCTTGGTAGCTTGACG 53894 Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755 || || ||||| |||||||| ||||| || ||||| |||| | |||| ||||| || | Sbjct 53893 CTGAGAGTCGTTGAAGTAGGCGGGGACAGTGACGACGGCGTTCTTGACGTTCTTGCCCAT 53834 Query 7756 ATACGATTCCGCGATATCTTTCATTTT 7782 || | || ||| | || ||||| || Sbjct 53833 GTAGGCCTCGGCGGTCTCCTTCATCTT 53807 >seq634 Length=211807 Score = 87.8 bits (96), Expect = 2e-12 Identities = 271/419 (65%), Gaps = 3/419 (1%) Strand=Plus/Plus Query 105562 ACGCGTTTCATGAACAAATCTGGAATCCACATGGCTGAAAAGAGGTCTCGACACCTCGCC 105621 || || |||||||| | || |||||||||| || | || | || || | | Sbjct 37443 ACCCGCTTCATGAAGAGGTCAGGAATCCACAGAGCGTAGAACAAATCACGGGCGCGGATC 37502 Query 105622 TCTTCATCACCTTGATTCAAACGAATTTCGAGAAAATCGAGAATATCGGCGTGCCATGGT 105681 ||||| | || || ||| |||| || || || | | | ||||||||||||||| Sbjct 37503 TCTTCCTTGCCATGGTTCTTGCGAAGATCAAGGAAGCCAAAGACATCGGCGTGCCATGGC 37562 Query 105682 TCTAAATAGACTGCAATAGACCCTTTACG---ACGCCCCGCTTGATTGACATATCTTGCG 105738 || | |||| || | || ||| || | || | || | |||||| | ||| Sbjct 37563 TCGAGGTAGATGGCGAAAGCACCTGGGCGCTTATTGCCACCCTGGTCGACATAACGAGCG 37622 Query 105739 GTTGAGTTATACACTCGTAACATTGGAATAATACCATCGGATGTTCCATTTGTTCCACGA 105798 || |||||| || || | ||| || || | || | ||| ||||| || ||||||| Sbjct 37623 GTGTTGTTATAGACACGAAGCATAGGGATGAGGCCGTTGGACGTTCCGTTCGTTCCACCG 37682 Query 105799 ATATGTGATTTATTTGCACGTACATCGTGAACGTGTAACCCAATACCCCCAGCCCACTTA 105858 || | ||| | ||||| | ||||| | | |||||||| ||||| ||| Sbjct 37683 ATGTATGAGCCGGTGGCACGGATGCGATGAACATTGAGACCAATACCGCCAGCGGTCTTG 37742 Query 105859 CTGATACGCGCACACTCTTTTACTGTATCGTAAATACCGTCGATACTATCTTCCTTATTC 105918 ||| || ||| || | || ||||| || || ||||| || || ||||| | Sbjct 37743 GAGATCATAGCGCACGTCTTCAGCGTGTCGTAGATGCCTTCGATGCTGTCATCCTTGATA 37802 Query 105919 GCAATCAGGAAACACGATGACATTTGTGGTCTGGGTGTACCAGCATTGAACAGAGTTGG 105977 | || ||||| || || ||||| ||||| ||||||| || || ||||| || ||||| Sbjct 37803 TCGATGAGGAAGCAGGAGGACATCTGTGGGTTGGGTGTTCCGGCGTTGAAAAGCGTTGG 37861 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635126758299240