Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clohesyomyces_20aquaticus_20[genbank_20GCA_5F002105025.1_202017-04- 20] 761 sequences; 49,677,730 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq634 277 2e-69 seq46 105 8e-18 seq390 100 4e-16 >seq634 Length=211807 Score = 277 bits (306), Expect = 2e-69 Identities = 1130/1750 (65%), Gaps = 37/1750 (2%) Strand=Plus/Minus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 ||||| ||||| ||||||| || || | || ||||| || ||||| || || | Sbjct 37969 CCACAACACATGCTCATGCGTGTAGCCGTTGGCATCCACGGCGAAGACATCGAGAAGGCC 37910 Query 111672 TTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTTC 111731 | ||||||||| || | |||||| |||| ||||| | ||||| || ||| Sbjct 37909 ATCGAGACATACAACTACATGTCCAACAAATACTTCACACACGCGTCTCCAACGCTTTTC 37850 Query 111732 AACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGAT 111791 ||||| || ||||| | || || |||||| || ||||| || | | |||||| || Sbjct 37849 AACGCCGGAACACCCAACCCACAGATGTCCTCCTGCTTCCTCATCGATATCAAGGATGAC 37790 Query 111792 TCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAA--ATCTCAAAGTGGGCTG 111849 ||| | ||||| |||| ||| || | | |||| | | ||||| ||| |||| Sbjct 37789 AGCATCGAAGGCATCTACGACACGCTGAAG--ACGTGCGCTATGATCTCCAAGACCGCTG 37732 Query 111850 GTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTA--TTAGAGGTAC 111907 | ||||| || | | | ||| || | |||| | | ||| || | | || || Sbjct 37731 GCGGTATTGGTCTCAATGTTCATCGCATCCGTGCCACC--GGCTCATACATCGGTGGAAC 37674 Query 111908 AAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTA 111967 || || || | || | || || |||||||| || | |||| ||| || || || Sbjct 37673 GAACGGAACGTCCAACGGCCTCATCCCTATGCTTCGTGTCTATAACAACACCGCTCGTTA 37614 Query 111968 TGTAAACCAAGCTGGGCGT---CGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCA 112024 ||| |||| | ||| | ||| || || |||| |||| || ||||||||||| Sbjct 37613 TGTCGACCAGGGTGGCAATAAGCGCCCAGGTGCTTTCGCCATCTACCTCGAGCCATGGCA 37554 Query 112025 CGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTG 112084 ||| ||| || | | |||||||| | || ||||| || | || ||| || Sbjct 37553 CGCCGATGTCTTTGGCTTCCTTGATCTTCGCAAGAACCATGGCAAGGAAGAGATCCGCGC 37494 Query 112085 CCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAG 112144 ||| ||| | |||| |||||| |||||||| || |||||||||||| | || |||| | Sbjct 37493 CCGTGATTTGTTCTACGCTCTGTGGATTCCTGACCTCTTCATGAAGCGGGTCCAGGATAA 37434 Query 112145 TGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGTGA 112204 ||| | ||| |||| || || || || | || || || | |||| | | || || Sbjct 37433 TGGAGAGTGGACTCTTTTCTGCCCGAACGAAGCCCCTGGGTTGGCCGACGTCTATGGCGA 37374 Query 112205 GGAGTTTGAAGCCCTCTA-CACAAAGTACGAGGAAGAAAGTCGGGCGAC-TGCGACGGTG 112262 ||||| || | || || ||| ||||| |||| || | || | ||| | ||| ||| Sbjct 37373 CGAGTTCGAGGAGCTGTATCAC-AAGTATGAGGCCGAGGGACGCG-GACGAGAGACTGTG 37316 Query 112263 CCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATA 112321 | || | || | | ||| | || || ||| || | || ||||||||||| | || || Sbjct 37315 CGCGC-CCAGAAGCTCTGGTACGCCATCCTCGAGGCCCAGACCGAGACTGGAAACCCGTA 37257 Query 112322 TATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAA 112381 |||||| ||||| || || || |||| || || || || ||||| | || || Sbjct 37256 TATGCTCTACAAGGATGCATGCAACCGCAAAAGCAACCAGAAGAACCTCGGAACTATTCG 37197 Query 112382 GAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTG 112441 || || |||||||| || || ||| | || | || | |||||| || || || Sbjct 37196 CAGCTCTAACCTCTGCACCGAGATCATTGAGTACACCGCACCCGATGAGGTTGCCGTCTG 37137 Query 112442 TAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACA-TTTGATT 112500 ||| | || || | || ||||| ||||||||| | | || | | | ||||| Sbjct 37136 CAACTTGGCCTCGCTTGCACTCCCTGCGTATGTGGA-CATGCAACGTGGCGAGTATGATT 37078 Query 112501 ATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGATA 112560 | || ||||||||||| | ||||| || || |||| |||| || Sbjct 37077 TCCAGAAGCTCCACGAAGTCGTCCAGGTCGTCACTCGTAATCTGAACAAGATTATCGAGG 37018 Query 112561 GAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTC 112620 ||| ||||| ||| ||||| || || | |||||| | || | |||| Sbjct 37017 TCAATCACTACCCGGTTCCTGAAGCTCGCAACAGCAACTTCAGACACAGGCCTGTCGGTC 36958 Query 112621 TCGGTGTCCAAGGTCTCGCGGATGTATTCAT-TCTTTGTCGCCACGCATTTGATTCCGAC 112679 | || ||||| ||||| ||||||| ||| | | || |||| | || || || | Sbjct 36957 TTGGAGTCCAGGGTCTTGCGGATGCCTTCCTCGCCCTG-CGCCTGCCCTTCGACTCTCCC 36899 Query 112680 GAAGCGAAGGAA-ATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGAGGC 112738 ||||| |||||| |||| | | || |||||||| || || ||||| ||||| | Sbjct 36898 GAAGC-AAGGAAGCTCAACACCCAGATCTTTGAGACCATCTACCACGCTGCTCTCACATC 36840 Query 112739 GAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTC 112798 | || || |||| ||| ||||||||||||||| | ||||| ||||| | || Sbjct 36839 GTCTTGCGATCTGGCCAAGGAACTTGGTCCATATGAAACTTACGAGGGCTCTCCTGTCTC 36780 Query 112799 ACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGA-GACCAAGCTTCACTACGACTGGG 112857 || || | ||||||| |||||||| |||| | | | ||| | || ||||||| Sbjct 36779 GCAGGGCATACTTCAATATGATATGT-GGAATATCACGCCCACCGACCTCTGGGACTGGG 36721 Query 112858 ACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAA 112917 | |||||||||| | ||| || | ||| |||| ||| || | | || || | Sbjct 36720 ATGCTCTCAAGGCAAAGATCGCACAGCATGGTGTTCGCAACTCGCTGCTTGTTGCCCCCA 36661 Query 112918 TGCCAACAGCCTCCACCGCACAAA-TCTTGGGTAATAATGAATGCTTTGAACCCTACACG 112976 |||| || |||||||| | |||| |||||| | | ||||||||||| ||||| || || Sbjct 36660 TGCCTACTGCCTCCACATCCCAAATTCTTGGCT-ACAATGAATGCTTCGAACCATATACC 36602 Query 112977 ACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCATCTC 113036 | |||||||| | | | || || ||||| | | |||||| ||| Sbjct 36601 TCCAACATCTACTCCCGCCGTGTTTTGGCCGGCGAGTTCCAGGTCGTCAACCCCTGGCTC 36542 Query 113037 GTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCATGGTGAAA 113096 || | || | || || || || ||||| | | |||||| | | ||| | Sbjct 36541 CTGAAGGATTTGGTTGACATGGGCCTGTGGTCTGACAACATGAAGAACCGCATCATCGCC 36482 Query 113097 GCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAGATGAAATTAAGAAGTTGTACCGC 113156 | ||||||||||| || | ||| | ||||| |||||||| ||| | | ||| Sbjct 36481 GATGGTGGTTCCATCCAGAGGATTCCTAACATTCCCGATGAAATCAAGGCGCTATACAAG 36422 Query 113157 ACAGTTTGGGAAAT---CAAGATGAAGGATGTCATTGACATGGCCGCAGATCGTGGTCGC 113213 || || |||||||| | || | | | ||||| | |||||||| || ||||| | Sbjct 36421 ACCGTGTGGGAAATCTCCCAG-CGTACCA--TCATTCAGATGGCCGCTGACCGTGGCGCC 36365 Query 113214 TTCATTGATCAAAGTCAAAGT--ATGAATCTATTCATGGAAAGTCCAACGATGTCCAAGC 113271 ||||| |||| |||| ||| | || | |||| | || || ||| |||| Sbjct 36364 TTCATCGATC--AGTCCCAGTCGCTCAACATTCACATGAAGGAGCCTACCATGGGCAAGA 36307 Query 113272 TCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGTATTACCTCC 113331 | | || |||||| | | | |||||| |||||||| || || | || ||||||| Sbjct 36306 TTACATCGATGCACTTCGCCGGATGGAAGCTTGGTCTCAAGACCGGCCTCTACTACCTCC 36247 Query 113332 GATCTAAGGC 113341 || | | ||| Sbjct 36246 GAACAATGGC 36237 >seq46 Length=404262 Score = 105 bits (116), Expect = 8e-18 Identities = 150/206 (73%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 102110 AGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTT-TGATACAAAGTCGC 102168 |||||| ||||| | || || || |||||| | |||| | | | ||||| | | Sbjct 337569 AGTTCCCTGTATCCGCCGCAAGGCCGACTGGGCTCTCCGGTGGATCTCAGACAAAAACTC 337628 Query 102169 GTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTT 102228 | ||||||| | || ||| | || || || || || || ||||||||||| |||| Sbjct 337629 GA-CCTTTGCGAACCGCCTCGTTGCCTTCGCCGCCGTAGAAGGCATCTTCTTCTCCGGTT 337687 Query 102229 CCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCC 102287 ||||| ||| | || | ||| | |||||||| || |||||||| || ||| ||||||| Sbjct 337688 CCTTC-GCGTCCATCTTCTGGTTGAAGAAGCGCGGCCTCATGCCCGGCCTCACCTTCTCC 337746 Query 102288 AACGAGCTTATCTCTCGTGACGAGGG 102313 ||||| || || |||||||||||||| Sbjct 337747 AACGAACTCATATCTCGTGACGAGGG 337772 >seq390 Length=251960 Score = 100 bits (110), Expect = 4e-16 Identities = 244/366 (67%), Gaps = 4/366 (1%) Strand=Plus/Plus Query 176689 CTTGAGAAGACTTGGCCAGAAGTAGTGAATCATATTGAGAATGAGACCCTTGATGTGGGA 176748 |||||| ||||| || | | | |||| | ||||| | |||||||||||| || Sbjct 45756 CTTGAGCAGACTAGGGAACTGGCATTGAAGGAAATTGATCAGGAGACCCTTGATATGACT 45815 Query 176749 ACCGTCGTTATCGGCATCCGTCATGATCATGAGACGACCATACCGAAGCTCGGAAACATC 176808 ||||||| || ||||||||||||||||||| | ||||| ||||| || || Sbjct 45816 GCCGTCGTGGTCCTGATCCGTCATGATCATGAGATGTCCATAGCGAAGGCCGCGCGTGTC 45875 Query 176809 TTGATAGTCCTTACCCTGTTGAAGACCCAAGATCTTCTTGAGATCGTTGAACTCTTGGTT 176868 ||| ||||| ||||||||||| | || ||| |||| | | || || ||||| Sbjct 45876 CGTATATTCCTTCTTGTGTTGAAGACCAAGGAACTTTTTGATGTTCTGGATTTCCTGGTT 45935 Query 176869 TGATGTGAGCTGTGTGACAGAGGCATCACGAACATTCTTACACTTCCCACGAAGAGGGAA 176928 | | ||| || ||| ||||| || ||||| ||| ||||| || || || Sbjct 45936 CTTCGATATCTGATCGATAGATGCATCTCGGACATTGAGTAGCTTACCACGCAGGGGAAA 45995 Query 176929 GACACCGTAGTGATCGCGACCAACCACAGAGAGACCCGCAACCGCGAGCGTTTTCGCAGA 176988 ||||||| | |||| || | || || | | || || | |||||| | || || Sbjct 45996 GACACCGAAAAGATCTGGATCCACGACCGCACGGCCAGCCAAAGCGAGCAGACTGGCCGA 46055 Query 176989 ATCACCCTCTGTCACGATGAGTGTACACTTGCCAG--ATTGTGCCGTACCCGCCTTGTTC 177046 || || || || | || || || ||||| |||| || | ||||| ||||||||| Sbjct 46056 GTCTCCTTCGGTGAGAATTAGAGTGCACTT-CCAGCCATCCT-TGGTACCAGCCTTGTTC 46113 Query 177047 GCATCA 177052 |||||| Sbjct 46114 GCATCA 46119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620736495187920