Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clohesyomyces_20aquaticus_20[genbank_20GCA_5F002105025.1_202017-04- 20] 761 sequences; 49,677,730 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq634 262 5e-65 seq46 91.5 2e-13 >seq634 Length=211807 Score = 262 bits (290), Expect = 5e-65 Identities = 912/1395 (65%), Gaps = 35/1395 (3%) Strand=Plus/Plus Query 105935 TAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGA-TTTGTGCGGTGGA 105993 |||||||| | || || ||||| ||||||||||| | | |||||| |||| | ||||| Sbjct 36591 TAGATGTTGGAGGTATATGGTTCGAAGCATTCATTGT-AGCCAAGAATTTGGGATGTGGA 36649 Query 105994 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTC 106053 ||| || ||||| || || | | || ||| |||| ||| | | ||| | | Sbjct 36650 GGCAGTAGGCATGGGGGCAACAAGCAGCGAGTTGCGAACACCATGCTGTGCGATCTTTGC 36709 Query 106054 CTTGAGAACATCCCAGTCGTAGTTGA-GCTTGGTTTCACCTTCCCACATATCAAATTGAA 106112 ||||||| |||||||||| || | | | || | | |||| |||||||| |||||| Sbjct 36710 CTTGAGAGCATCCCAGTCCCAGAGGTCGGTGGGCGTGATATTCC-ACATATCATATTGAA 36768 Query 106113 GCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCA 106172 | | || || || ||||| ||||| | || ||||| | ||| | | | |||| Sbjct 36769 GTATGCCCTGCGAGACAGGAGAGCCCTCGTAAGTTTCATATGGACCAAGTTCCTTGGCCA 36828 Query 106173 ATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCT 106232 || || || || | ||||| || ||||| |||||||| | | || | || Sbjct 36829 GATCGCAAGACGATGTGAGAGCAGCGTGGTAGATGGTCTCAAAGATCTGGGTGTTGAGCT 36888 Query 106233 CCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAA-ATAAATACATCCGCGAGACCT 106291 | | ||||| || || || | | || ||| | || ||||||| ||||| Sbjct 36889 TCCTTGCTTCGGGAGAGTCGAAGG-GCAGGCGCAGGGCGAGGAAGGCATCCGCAAGACCC 36947 Query 106292 TGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA---ACG 106348 || || || | ||| | ||| ||||||| | || || | ||| || ||| || Sbjct 36948 TGGACTCCAAGACCGACAGGCCTGTGTCTGAAGTTG--CTGTTGCG-AGCTTCAGGAACC 37004 Query 106349 GGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCA 106408 || || ||| || || | ||| ||||| || || | || || ||| Sbjct 37005 GGGTAGTGATTGACCTCGATAATCTTGTTCAGATTACGAGTGACGACCTGGACGACTTCG 37064 Query 106409 TGAAGTTTTTCATAATCAAAAGTGCGA-GTCTCTTCATTGACATACTTTGGAAGGGCGAT 106467 || || || | ||||| | || | || | | | |||||| || || || | Sbjct 37065 TGGAGCTTCTGGAAATCATACTCGCCACGTTGCATG-TCCACATACGCAGGGAGTGCAAG 37123 Query 106468 TGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACA 106527 || ||||| ||||| || || |||||| | |||||||| | || || || || Sbjct 37124 CGAGGCCAAGTTGCAGACGGCAACCTCATCGGGTGCGGTGTACTCAATGATCTCGGTGCA 37183 Query 106528 CAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATC 106587 | ||| || || ||| || || | ||||| ||||| || || |||||| ||||| Sbjct 37184 GAGGTTAGAGCTGCGAATAGTTCCGAGGTTCTTCTGGTTGCTTTTGCGGTTGCATGCATC 37243 Query 106588 CTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA- 106646 |||||||||||| || || | || ||||| ||||| | || ||| || || | ||| | Sbjct 37244 CTTGTAGAGCATATACGGGTTTCCAGTCTCGGTCTGGGCCTCGAGGATGGCGTACCAGAG 37303 Query 106647 CATCGGCGGCTGGTACAATGGCGTTGGCC-CGTCCCTCCGCCTCGTACTTTGTG-TAGAG 106704 | || | ||| | ||| | | | | || |||||||| ||||| ||| ||||| || || Sbjct 37304 CTTCTG-GGCGCGCACAGTCTC-TCGTCCGCGTCCCTCGGCCTCATAC-TTGTGATACAG 37360 Query 106705 GGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAG 106764 | || ||||| || || |||||| | || || || | || || |||||||| Sbjct 37361 CTCCTCGAACTCGTCGCCATAGACGTCGGCCAACCCAGGGGCTTCGTTCGGGCAGAAAAG 37420 Query 106765 AGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGA 106824 || ||| | ||| |||| |||||||||||||| ||||| ||||||||||| | | Sbjct 37421 AGTCCACTCTCCATTATCCTGGACCCGCTTCATGAAGAGGTCAGGAATCCACAGAGCGTA 37480 Query 106825 AAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTC 106884 || | ||| | || |||||| | || ||||| || | |||||||| | Sbjct 37481 GAACAAATCACGGGCGCGGATCTCTTCCTTGCCATGGTTCTTGCGAAGATCAAGGAAGCC 37540 Query 106885 CATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC----- 106939 | || ||| |||||||||||||| || |||| |||| || || | | ||| Sbjct 37541 AAAGACATCGGCGTGCCATGGCTCGAGGTAGATGGCGAAAGCACC---TGGGCGCTTATT 37597 Query 106940 -CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACC 106998 ||| | || | ||||| || || ||| |||| | || |||||||| || || | || Sbjct 37598 GCCACCCTGGTCGACATAACGAGCGGTGTTGTTATAGACACGAAGCATAGGGATGAGGCC 37657 Query 106999 ATCTGATTGACCATTTG-TCCCCCGA-ATACGAGATTTATTGGCTCTCACATCATGGATG 107056 | || || || | ||| |||| || ||| |||| | | ||| | Sbjct 37658 GTTGGACGTTCCGTTCGTTCCACCGATGTATGAG--CCGGTGGCACGGATGCGATGAACA 37715 Query 107057 TGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAG 107116 | | |||||||| ||||| ||| ||||| || ||| | | || || | ||| Sbjct 37716 TTGAGACCAATACCGCCAGCGGTCTTGGAGATCATAGCGCACGTCTTCAGCGTGTCGTAG 37775 Query 107117 ATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTT 107176 || || | ||| ||| |||||| | |||| |||||||| ||||||||| || | Sbjct 37776 ATGCCTTCGATGCTGTCATCCTTGATATCGATGAGGAAGCAGGAGGACATCTGTGGGTTG 37835 Query 107177 GGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGACATCTT 107235 ||||| || || ||||| || ||||| | ||||| |||| || | | |||||| | Sbjct 37836 GGTGTTCCGGCGTTGAAAAGCGTTGGAGACGCGTGTGTGAA-GTATTTGTTGGACATGTA 37894 Query 107236 GTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCAT 107295 || ||||||||| | | | || |||||||| ||||||||||| | ||| |||||||| Sbjct 37895 GTTGTATGTCTCGATGGCCTTCTCGATGTCTTCGCCGTGGATGCCAACGGCTACACGCAT 37954 Query 107296 AAACATGTATTGGGG 107310 | ||||| ||| || Sbjct 37955 GAGCATGTGTTGTGG 37969 >seq46 Length=404262 Score = 91.5 bits (100), Expect = 2e-13 Identities = 310/473 (66%), Gaps = 25/473 (5%) Strand=Plus/Minus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 || || || || | |||||| |||||||| ||||| || | || ||||| ||||| Sbjct 338078 TAATCACCGACCCTCTTCTCGAAGAAGTTTGTCTTACCGGCCAGCGAGATGTTCTCCATG 338019 Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAAA-----TGGGTGGCACC--CCAACTTGTTTGAG 117098 ||||| || || || | ||||| | | ||| || | |||| ||| Sbjct 338018 AAGTCGAAGGGGTTGGTGGCGTTGTAGAACTTTTGGTTGCCGAGAGCCAA-------GAG 337966 Query 117099 GAGACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAG 117158 || || || | || |||| ||||||| | |||| || |||||||| |||| || Sbjct 337965 CAGGCGGTCGGCGACGAACTCGATGTACTGGCACATGAGCTTGGAGTTCATGCCGAGAAG 337906 Query 117159 ATTACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGAT 117218 | ||| || || || || || |||| ||| ||| || || || || | | ||| Sbjct 337905 AGCACACGGTAGAGCTTCTGTGAGGAACTCTTGCTCGATGGTGACAGCTTCGGTGATGAT 337846 Query 117219 GGCGTGGA--TAGTTTCGGTAGTGG-GTCTATTACGCAAAGTCTTGAAGAGCTC-CACGG 117274 ||| | || | ||| | | | || | || | | || |||||| |||| Sbjct 337845 GGCCTCGACTTCCTTTTGCGACGGACGTGTGTTGAGGAGAGA---GAAGAGTAGGCACG- 337790 Query 117275 CAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTG 117334 | || || ||| | ||||| || || || || ||||| || |||||| ||||| | Sbjct 337789 CGAAGTCGGTGTGCATGCCCTCGTCACGAGATATGAGTTCGTTGGAGAAGGTGAGGCCGG 337730 Query 117335 GCATGAGACCCCGCTTCTTCAACCAATAAATAG-CGCAGAATGACCCGGAGAAGAAGATA 117393 ||||||| || |||||||||||||| | || | ||| ||| || |||||||||||||| Sbjct 337729 GCATGAGGCCGCGCTTCTTCAACCAGAAGATGGACGC-GAAGGAACCGGAGAAGAAGATG 337671 Query 117394 CCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGT 117446 || || || || || |||| ||||| | || |||| |||| ||||| Sbjct 337670 CCTTCTACGGCGGCGAAGGCAACGAGGCGGTTCGCAAAGG-TCGAGTTTTTGT 337619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589975187807640