Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clohesyomyces_20aquaticus_20[genbank_20GCA_5F002105025.1_202017-04- 20] 761 sequences; 49,677,730 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq634 275 1e-68 seq46 127 4e-24 >seq634 Length=211807 Score = 275 bits (304), Expect = 1e-68 Identities = 741/1115 (66%), Gaps = 39/1115 (3%) Strand=Plus/Plus Query 221366 CCATCGTACGACTCGTAGGGACCGTACAGTTC---GGCCTGGGCGCAAGACTGCGTCAGG 221422 || ||||| | || || ||||| ||||| |||| | |||||||| || || Sbjct 36792 CCCTCGTAAGTTTCATATGGACCA---AGTTCCTTGGCCAGATCGCAAGACGATGTGAGA 36848 Query 221423 GCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGAGAAGTG 221482 ||||||||||||||||||||||||||| ||||||| || | || |||||||| | Sbjct 36849 GCAGCGTGGTAGATGGTCTCAAAGATCTGGGTGTTGAGCTTCCTTGCTTCGGGAGAGTCG 36908 Query 221483 AAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGATGGGC 221542 ||||||| ||||| | ||| | || || || ||||| ||||| | ||||| ||| Sbjct 36909 AAGGGCAGGCGCAGGGCGAGGAAGGCATCCGCAAGACCCTGGACTCCAAGACCGACAGGC 36968 Query 221543 CTGTGTCTCCTGTTG--GAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGATCA 221600 |||||||| |||| | ||| ||||| || || || || ||||| ||||| | Sbjct 36969 CTGTGTCTGAAGTTGCTGTTGCGA--GCTTCAGGAACCGGGTAGTGATTGACCTCGATAA 37026 Query 221601 GATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGAACA 221660 ||||| || || |||||| ||| | || || ||| ||||||||| || Sbjct 37027 TCTTGTTCAGATTACGAGTGACGACCTGGACGACTTCGTGGAGCTTCTGGAAAT------ 37080 Query 221661 CCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCAGGT 221720 | ||||||| | || || | | |||||| | || || |||| ||||| || Sbjct 37081 CATACTCGCCAC-GT--TGCATG---TCCACATACGCAGGGAGTGCAAGCGAGGCCAAGT 37134 Query 221721 TACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTT---GC 221777 | || ||||| ||||| || ||| |||| |||||||| || |||||||| || Sbjct 37135 TGCAGACGGCAACCTCATCGGGTGCGGTGTACTCAATGATCTCGGTGCAGAGGTTAGAGC 37194 Query 221778 TGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGA 221837 ||| || || || |||| || || || ||||| ||| || |||||||||| Sbjct 37195 TGCGA---ATAGTTCCGAGGTTCTTCTGGTTGCTTTTGCGGTTGCATGCATCCTTGTAGA 37251 Query 221838 GCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTGG 221897 ||||| | || |||||||| ||| ||| | || || || |||||| | ||||| Sbjct 37252 GCATATACGGGTTTCCAGTCTCGGTCTGGGCCTCGAGGATGGCGTACCAGAGCT-TCTGG 37310 Query 221898 -CGCTCACCGTCCTCTTGACTGCA-CCCTCGGTCTTTTCATACCCGGTATAGAGCATGTC 221955 ||| ||| ||| ||| | | || ||||||| || ||||| | ||| ||| || Sbjct 37311 GCGCGCACAGTC-TCTCGTCCGCGTCCCTCGGCCT---CATACTTGTGATACAGCTCCTC 37366 Query 221956 AAACTTTTCACCGTACGCCTCGTCCAGGCCTGGA-CACCTGGCGGGACACATCAGACTCC 222014 |||| || || || | ||| ||| || || | | |||| || | ||| ||| Sbjct 37367 GAACTCGTCGCCATAGACGTCGGCCAACCCAGGGGCTTCGTTCGGG-CAGAAAAGAGTCC 37425 Query 222015 AGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGA 222074 | | || || | ||||| || |||||||||||| || |||||||| || | || | Sbjct 37426 ACTCTCCATTATCCTGGACCCGCTTCATGAAGAGGTCAGGAATCCACAGAGCGTAGAACA 37485 Query 222075 GATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAA 222134 ||| | || || ||| ||| ||| | ||| || | ||||| | || |||| | Sbjct 37486 AATCACGGGCGCGGATCTCTTCCTTGCCATGGTTCTTGCGAAGATCAAGGAAGCCAAAGA 37545 Query 222135 TGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCT 222194 || |||||||| ||||| || |||| ||| | ||| || || ||||| |||||||||| Sbjct 37546 CATCGGCGTGCCATGGCTCGAGGTAGATGGCGAAAGCACCTGGGCGCTTATTGCCACCCT 37605 Query 222195 GATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGAT 222253 | || | ||| | | | ||| ||| ||||| | || | || |||||||| Sbjct 37606 GGTCGA-CATAACGAGCGGTGTTGTTATAGACACGAAGCATAGGGATGAGGCCGTTGGAC 37664 Query 222254 CGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAGACATGCCG 222313 ||||| || || ||||| | ||| ||| | | | | || | || Sbjct 37665 GTTCCGTTCGTTCCACCGATGTATGAGCCGGTGGCACGGATGCGATGAACATTGAGACCA 37724 Query 222314 ATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCTCC 222373 ||||| || ||| || |||||||| ||||| |||| || ||||| |||||| || Sbjct 37725 ATACCGCCAGCGGTCTTGGAGATCATAGCGCACGTCTTCAGCGTGTCGTAGATGCCTTCG 37784 Query 222374 ATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGAACAG 222433 || ||| ||||||| | | || || || || |||||||| | |||| | | | Sbjct 37785 ATGCTGTCATCCTTGATATCGATGAGGAAGCAGGAGGACATCTGTGGGTTGGGTGTTCCG 37844 Query 222434 GCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTA 222468 ||||| || ||||| ||| |||||||| ||||| Sbjct 37845 GCGTTGAAAAGCGTTGGAGACGCGTGTGTGAAGTA 37879 >seq46 Length=404262 Score = 127 bits (140), Expect = 4e-24 Identities = 296/454 (65%), Gaps = 25/454 (6%) Strand=Plus/Plus Query 25879 CGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATC 25938 || || || ||||| || || || || |||||||| ||| |||||| || ||| ||||| Sbjct 337642 CGCCTCGTTGCCTTCGCCGCCGTAGAAGGCATCTTCTTCTCCGGTTCCTTCGCGTCCATC 337701 Query 25939 TTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGC 25998 |||||| | ||| || || ||||||||| || ||| |||||||| ||||| Sbjct 337702 TTCTGGTTGAAGAAGCGCGGCCTCATGCCCGGCCTCACCTTCTCCAACGAACTCATATCT 337761 Query 25999 AGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCAC 26058 | |||||||| | |||| || || || ||||| |||| | | || || || Sbjct 337762 CGTGACGAGGGCATGCACACCGACTTCGCGTGCCTACTCTTCTCTCTCC------TCAAC 337815 Query 26059 AAACCT---TCTCAAGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAG 26115 | || | || ||| || ||| | ||||||| || ||||| |||||| | Sbjct 337816 ACACGTCCGTCGCAAAAGGAAGTCGAGGCCATCATCACCGAAGCTGTCACCATCGAGCAA 337875 Query 26116 GAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGC 26175 ||||| | | ||||||||| || |||||| || Sbjct 337876 GAGTTCCTCACAGAAGCTCTACCGTGTGCTCTTCTCGGCATGAACTCCAAGCTCATGTGC 337935 Query 26176 CAATACATTGAGTATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGAC----- 26230 || ||||| |||| || ||||||| ||||| | ||| |||| || | Sbjct 337936 CAGTACATCGAGTTCGTCGCCGACCGCCTGCTCT------TGGCTCTCGGCAACCAAAAG 337989 Query 26231 -TCTACAGTACGCCT--AACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGA 26287 |||||| ||||| ||||| |||||||| ||||| ||||| ||| ||| || |||| Sbjct 337990 TTCTACA--ACGCCACCAACCCCTTCGACTTCATGGAGAACATCTCGCTGGCCGGTAAGA 338047 Query 26288 CCAACTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321 | |||||||| || ||||||||||| || || || Sbjct 338048 CAAACTTCTTCGAGAAGAGGGTCGGTGATTACCA 338081 Score = 98.7 bits (108), Expect = 2e-15 Identities = 164/234 (70%), Gaps = 5/234 (2%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| | |||||||||||||| || ||| ||||||||||||||||| ||||| Sbjct 337182 ATCTGGCAAATGTACAAGAAGGCCGAAGCCTCTTTTTGGACCGCCGAAGAGATCGATCTC 337241 Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGT-- 25594 |||| ||| | ||| |||| || | || || ||||| ||| || ||| | Sbjct 337242 TCCAAAGACCTCCACGACTGGAACAAGCGATTGAACGACGACGAGCGCTTCTTCATCTCC 337301 Query 25595 -ACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 |||| | || ||||| || ||||| || || || || |||||||| ||| |||| | Sbjct 337302 CACGTCCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTCAACGAGAACCTGGTCGAGCGC 337361 Query 25654 TTCACCAGGGAAGTGC-AGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGAT 25706 || | | | || |||| ||| | ||||| || |||||||| |||||||| Sbjct 337362 TTTAGCGGAGAGGTGCAAGTGC-CCGAGGCGCGATGCTTCTACGGCTTCCAGAT 337414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928835964363840