Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clohesyomyces_20aquaticus_20[genbank_20GCA_5F002105025.1_202017-04- 20] 761 sequences; 49,677,730 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq46 149 8e-30 seq113 136 5e-26 seq634 134 2e-25 seq78 96.9 4e-14 seq755 95.1 1e-13 >seq46 Length=404262 Score = 149 bits (164), Expect = 8e-30 Identities = 185/253 (73%), Gaps = 3/253 (1%) Strand=Plus/Minus Query 869631 CCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTT 869690 |||||||||||||||| || ||||||||||||||| ||| | | |||| | ||||| Sbjct 337437 CCGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGCGCCTCGGGCACTT 337378 Query 869691 GGACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGA 869750 | ||||| | || || || ||||||||||| |||||||||||| |||||||| Sbjct 337377 GCACCTCTCCGCTAAAGCGCTCGACCAGGTTCTCGTTGACGATGCCGTCGGAGGCGGCGA 337318 Query 869751 AAAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGA---GCGACACCCAGT 869807 | || || |||||||| ||| ||| ||||||||||||| | | || ||||| Sbjct 337317 AGAAGGCGAGGACGTGGGAGATGAAGAAGCGCTCGTCGTCGTTCAATCGCTTGTTCCAGT 337258 Query 869808 GGACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTT 869867 | | ||| | ||| || | ||| ||||||||||| | ||||| |||||||| | Sbjct 337257 CGTGGAGGTCTTTGGAGAGATCGATCTCTTCGGCGGTCCAAAAAGAGGCTTCGGCCTTCT 337198 Query 869868 TGTACATCTCCCA 869880 ||||||| | ||| Sbjct 337197 TGTACATTTGCCA 337185 Score = 134 bits (148), Expect = 2e-25 Identities = 175/242 (72%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| || || || | | |||||| ||||| ||||| || | |||||||| Sbjct 338087 GCCTTCTGGTAATCACCGACCCTCTTCTCGAAGAAGTTTGTCTTACCGGCCAGCGAGATG 338028 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 |||||| | ||| ||||||| | |||||| ||||| | ||||| | | | Sbjct 338027 TTCTCCATGAAGTCGAAGGGGTTGGTGGCGTTGTAGAACTTTTGGTTGCCGAGAGCCAAG 337968 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 ||||||||||||||||| ||||||||||||||||||||||| || ||||||||||| Sbjct 337967 AGCAGGCGGTCGGCGACGAACTCGATGTACTGGCACATGAGCTTGGAGTTCATGCCGAGA 337908 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 || || ||| || | || | | ||||||| |||||| ||| || ||| |||| Sbjct 337907 AGAGCACACGGTAGAGCTTCTGTGAGGAACTCTTGCTCGATGGTGACAGCTTCGGTGATG 337848 Query 868931 AT 868932 || Sbjct 337847 AT 337846 Score = 113 bits (124), Expect = 6e-19 Identities = 143/192 (74%), Gaps = 11/192 (6%) Strand=Plus/Minus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 || ||||| ||| || | ||||||| |||| ||||||||||||||||||||||||| Sbjct 337772 CCCTCGTCACGAGATATGAGTTCGTTGGAGAAGGTGAGGCCGGGCATGAGGCCGCGCTTC 337713 Query 869240 TTGAGCCAAAAGATGG-CGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 || | ||| ||||||| ||| ||| || ||||| |||||||| || |||||||| || Sbjct 337712 TTCAACCAGAAGATGGACGC-GAAGGAACCGGAGAAGAAGATGCCTTCTACGGCGGCGAA 337654 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGT---TGATCCACTTCATCGC 869355 | | | ||| || | |||||| |||||| | |||| ||||||| | || Sbjct 337653 GGCAACGAGGCGGTTCGCAAAG--GTCGAG----TTTTTGTCTGAGATCCACCGGAGAGC 337600 Query 869356 CCAGTCGGCCTT 869367 |||||||||||| Sbjct 337599 CCAGTCGGCCTT 337588 >seq113 Length=352843 Score = 136 bits (150), Expect = 5e-26 Identities = 99/115 (86%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 || ||||||||||||||||||||| |||| ||||| | || |||||| | || |||||| Sbjct 76280 GCTGCCAACTACCTCGACATCAAGGCTCTCCTCGACGTGGGCTGCAAGACGGTCGCCAAC 76221 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAGTACG 1592300 |||||||||||||||||||| || |||||||||||||| || |||||| || ||| Sbjct 76220 ATGATCAAGGGCAAGTCGCCGGATGAGATCCGCAAGACATTCAACATCCAGAACG 76166 >seq634 Length=211807 Score = 134 bits (148), Expect = 2e-25 Identities = 188/264 (71%), Gaps = 0/264 (0%) Strand=Plus/Plus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 ||||||||| || || || |||| |||| |||| || ||||| || | |||||||||||| Sbjct 37604 CTGGTCGACATAACGAGCGGTGTTGTTATAGACACGAAGCATAGGGATGAGGCCGTTGGA 37663 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 | ||||| || || | | ||| | ||||| ||| || | || | | || Sbjct 37664 CGTTCCGTTCGTTCCACCGATGTATGAGCCGGTGGCACGGATGCGATGAACATTGAGACC 37723 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 || ||||| || | ||||||||| | |||||| || ||||||||||||||||| || Sbjct 37724 AATACCGCCAGCGGTCTTGGAGATCATAGCGCACGTCTTCAGCGTGTCGTAGATGCCTTC 37783 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 ||| ||| |||| || || | ||| ||||| || || | || |||| | || || Sbjct 37784 GATGCTGTCATCCTTGATATCGATGAGGAAGCAGGAGGACATCTGTGGGTTGGGTGTTCC 37843 Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGC 1630328 ||||||||| ||||| || | ||| Sbjct 37844 GGCGTTGAAAAGCGTTGGAGACGC 37867 >seq78 Length=92384 Score = 96.9 bits (106), Expect = 4e-14 Identities = 224/335 (67%), Gaps = 2/335 (1%) Strand=Plus/Minus Query 1573901 GCCCGGCACGGGCAAGACCACGAGCATCGCGTGTCTGGCGCGTGTCCTCTTGGGCGCGGC 1573960 ||| |||| || ||||| || ||| || || ||||| ||| | |||| || Sbjct 8910 GCCAGGCATCGGTAAGACGACCTCGATCCTCTGCCTCGCGCGCCAGCTCCTCGGCGACGC 8851 Query 1573961 CGCCGACGAGGCCGTGCTCGAACTCAACGCGTCGGACGAGCGCGGCGTCGACGTCGTGCG 1574020 | | | || ||||| ||||||||||| || || |||||||||||| |||||||||| || Sbjct 8850 CTACAAGGAAGCCGTCCTCGAACTCAATGCCTCAGACGAGCGCGGCATCGACGTCGTACG 8791 Query 1574021 CAAGATCATCAAGCACCACGCCTCCAAGAGGATCGACCTGCCGCCCGGACGCCACAAGGT 1574080 ||| || ||| | || |||| || || ||||| || | || || | Sbjct 8790 CAACCGGATAAAGGGCTTTGCGCAGAAGAAAGTCACGCTTCCGCCTGGGAGACAGAAACT 8731 Query 1574081 GATCATCCTCGACGAGGCCGACTGCCTCACG-TCGGCGGCCCAGCAGGCCCTGCGGTCCA 1574139 | | ||||| |||||||| ||| || | ||| |||| || || ||||| || | || Sbjct 8730 GGTTATCCTGGACGAGGCGGACAGCATGACGAGCGGC-GCGCAACAGGCGCTAAGACGCA 8672 Query 1574140 CCATGGAAAAGCACACCAACACGACGCGCTTTGCCCTGGCGTGCAACACGTCGTCGATGG 1574199 | ||||| | | | | || ||| | ||||| | |||||||| |||| | | Sbjct 8671 CAATGGAGATTTATAGCGCGACAACGAGGTTTGCGTTTGCGTGCAATCAGTCGAATAAGA 8612 Query 1574200 TCATCGAGGCCCTCCAAAGTCGCTGCGCCATTCTG 1574234 |||||||| | ||||| || ||||||||| || Sbjct 8611 TCATCGAGCCGCTCCAGTCACGTTGCGCCATTTTG 8577 >seq755 Length=163263 Score = 95.1 bits (104), Expect = 1e-13 Identities = 106/139 (76%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 19047 GACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAAC-GTGCCGGCAGGCCTCGGCGA 19105 |||||||||||||| || || || || ||| ||| || | || || ||||| ||||| Sbjct 129327 GACAGCATCGGCGGGACCGTTACATGTGTGATTCGGAATTGCCCCAGC-GGCCTGGGCGA 129269 Query 19106 GCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCAC 19165 ||| ||||| |||||| |||||||| | || || ||||||||||| || || ||||| Sbjct 129268 GCCTTGCTTCGACAAGCTCGAGGCCACTCTTGCGCACGCCATGCTCAGCATTCCCGCCAC 129209 Query 19166 CAAGGGATTCGAGATTGGC 19184 || | |||||||| ||| Sbjct 129208 GAAAGCCTTCGAGATCGGC 129190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107076748776237