Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clohesyomyces_20aquaticus_20[genbank_20GCA_5F002105025.1_202017-04- 20] 761 sequences; 49,677,730 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq634 123 2e-23 seq412 113 4e-20 seq738 93.3 4e-14 >seq634 Length=211807 Score = 123 bits (136), Expect = 2e-23 Identities = 607/945 (64%), Gaps = 31/945 (3%) Strand=Plus/Plus Query 139080 AATCGAGGCTATGTTGCACACCGCCACTTCGTCGGGGTCGCTGTATTCGACAATTTCGGC 139139 || |||||| | |||||| || || || || ||||| || |||| || | || |||| Sbjct 37121 AAGCGAGGCCAAGTTGCAGACGGCAACCTCATCGGGTGCGGTGTACTCAATGATCTCGGT 37180 Query 139140 ACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGC 139199 || | ||| | || || || | || | || |||||||| ||||| || || Sbjct 37181 GCAGAGGTTAGAGCTGCGAATAGTTCCGAGGTTCTTCTGGTTGCTTTTGCGGTTGCATGC 37240 Query 139200 ATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTGTCTCTATAATGAATTTGAA 139259 ||| ||||| ||||||||||| | ||||| || || | ||| | ||| | | Sbjct 37241 ATCCTTGTAGAGCATATACGGGTTTCCAGTCTCGGTCTGGGCCTCGAGGATGGCGTACCA 37300 Query 139260 CAAGTCCCTAGCTTGTATTTGACGCACGTAAA-GTTCGTCGCGCTCGTACTTTTCGTAGA 139318 | | | || | | | | | ||| || | ||| ||| ||||| | || | Sbjct 37301 GAGCTTCTGGGCGCGCACA-GTCTCTCGTCCGCGTCCCTCGGCCTCATACTTGTGATACA 37359 Query 139319 GTTCGTCGAA-TCGTTCACCGTAGGCGTCAGAAAGATCGCGACACTT-GTCAGGACACAT 139376 | || ||||| |||| | || ||| |||| | | | | | ||| || || || | Sbjct 37360 GCTCCTCGAACTCGT-CGCCATAGACGTCGGCCA-ACCCAGGGGCTTCGTTCGGGCAGAA 37417 Query 139377 GAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGATCCGGAATCCACAAAGC 139436 || | ||| | || || ||| ||| ||| ||||||| || || |||||||||| ||| Sbjct 37418 AAGAGTCCACTCTCCATTATCCTGGACCCGCTTCATGAAGAGGTCAGGAATCCACAGAGC 37477 Query 139437 GAACAGCAAATCGCGCGCCTTCTTATCTTCCGAACCCATGTTACGTTTCATGTT-AAGGA 139495 | | | |||||| || || | |||||| || ||| | | | | | | ||||| Sbjct 37478 GTAGAACAAATCACGGGCGCGGATCTCTTCCTTGCC-ATGGTTCTTGCGAAGATCAAGGA 37536 Query 139496 AATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTTCCG---TT 139552 | |||| || || ||||||||||| || || |||||||| | || ||| || | Sbjct 37537 AGCCAAAGACATCGGCGTGCCATGGCTCGAGGTAGATGGCGAAAGCACCTGGGCGCTTAT 37596 Query 139553 TGCCACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCCAGAC 139612 ||||||| || ||||| | || | | || || | || || | ||| || || | Sbjct 37597 TGCCACCCTGGTCGACATAACGAGCGGTGTTGTTATAGACACGAAGCATAGGGATGAGGC 37656 Query 139613 CGCTCGCTGTTCCGTTGGTGCTACGGATG---GGACTGTTGCGAGCTCGGACGTCATGTA 139669 || | | |||||||| || | || |||| | | | || || |||| | ||| | Sbjct 37657 CGTTGGACGTTCCGTTCGTTCCACCGATGTATGAGCCGGTG---GCACGGATGCGATGAA 37713 Query 139670 CATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCAATCGCGT--AATGTCTC 139727 |||||| || || ||||| | ||||| || | | |||| || | | || || Sbjct 37714 CATTGAGACCAATACCGCCAGCGGTCTTGGAGATCATAGCGCA--CGTCTTCAGCGTGTC 37771 Query 139728 GTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGACGAAAGTTGCGG 139787 ||| || ||| |||||||| |||| || || || ||||| || || | || || Sbjct 37772 GTAGATGCCTTCGATGCTGTCATCCTTGATATCGATGAGGAAGCAGGAGGACATCTGTGG 37831 Query 139788 TAGTTTCGTG--CCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAA-CATTTGTTTCGA 139844 ||| ||| ||||| || || || ||| |||||| ||||| ||||| || || Sbjct 37832 --GTTGGGTGTTCCGGCGTTGAAAAGCGTTGGAGACGCGTGTGTGAAGTATTTG-TTGGA 37888 Query 139845 CATCAATTCGTACGTTTCGATGGCGCTCACAATATCCCTTCCGTGGATACCGACAGAGAC 139904 ||| | | ||| || |||||||| || | || || |||||||| || || | || Sbjct 37889 CATGTAGTTGTATGTCTCGATGGCCTTCTCGATGTCTTCGCCGTGGATGCCAACGGCTAC 37948 Query 139905 TCGCATCAGCATATGTTGGATCCGTTCGGCCACCGCGCCCTCGAtttttttCAGATA--A 139962 ||||| ||||| ||||| || || || | | ||| | || ||||| | Sbjct 37949 ACGCATGAGCATGTGTTGTGGACGCTCAGCAATCTTGCCGTTTATGCGGAGGAGATATGA 38008 Query 139963 CCGTTCTCTAGGGTCTTGTAGCCAAAGTACCTATAGTTGAAATCG 140007 ||| || |||||||| |||||||| || |||||||| ||| Sbjct 38009 GCGT--TCCAGGGTCTTAAAGCCAAAGAACTGGTAGTTGAAGTCG 38051 >seq412 Length=249799 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || ||||| || || || ||||| || || || | || Sbjct 4298 ATGCAGATCTTCGTCAAGACACTCACCGGCAAGACGATCACGCTAGAGGTTGAGTCGTCC 4239 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | || | || || |||||||| || ||||| || || || || || || Sbjct 4238 GACACAATCGACAACGTGAAGTCCAAGATCCAGGATAAAGAGGGTATTCCCCCGGACCAG 4179 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||| | |||||||| || || ||| ||||||| ||| | || || || ||| Sbjct 4178 CAACGTCTCATCTTTGCTGGTAAGCAGTTGGAGGACGGCCGAACGCTCTCGGACTACAAC 4119 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTG 24913 || || ||||| ||||| || ||||||||| Sbjct 4118 ATCCAGAAGGAGTCGACTCTGCACTTGGTG 4089 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || ||||| || ||||| || ||||| || || | || Sbjct 4526 ATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACTATCACCCTCGAGGTGGAGTCGTCC 4467 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | || |||| ||| ||||| || || || || || || || || || ||||| Sbjct 4466 GATACCATCGACAACGTCAAATCAAAA-ATTCAGGATAAGGAGGGCATTCCCCCGGATCA 4408 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || ||| | ||||| ||||| || ||||| || ||| | | | |||| || || || Sbjct 4407 GCAGCGTCTCATCTTCGCCGGCAAGCAGCTTGAAGATGGCCGCACCCTGTCCGACTACAA 4348 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| || || || || || || |||||||| |||| |||| || || Sbjct 4347 CATCCAGAAAGAGTCCACCCTCCACTTGGTTCTGCGTCTGCGAGGTGG 4300 >seq738 Length=174967 Score = 93.3 bits (102), Expect = 4e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 ||||| || ||||| || || || || || || ||||| ||||||||||| ||||| || Sbjct 25371 AAGATTCAGGACAAGGAGGGCATTCCCCCGGACCAACAGCGTTTGATCTTCGCCGGCAAG 25312 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907 ||||| |||||| | | | | || || || ||||| || ||||| ||||| || ||| Sbjct 25311 CAGCTCGAGGATGGCCGCACCCTTTCCGACTACAACATCCAGAAGGAGTCGACTCTGCAC 25252 Query 24908 TTGGTG 24913 |||||| Sbjct 25251 TTGGTG 25246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449893320349080