Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clohesyomyces_20aquaticus_20[genbank_20GCA_5F002105025.1_202017-04- 20] 761 sequences; 49,677,730 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq78 134 2e-25 seq46 134 2e-25 seq113 131 3e-24 seq634 120 5e-21 >seq78 Length=92384 Score = 134 bits (148), Expect = 2e-25 Identities = 272/399 (68%), Gaps = 6/399 (2%) Strand=Plus/Minus Query 2019003 GACGGCAACATGCCCAACCTCTTGCTGGCGGGCCCGCCCGGCACGGGCAAGACCACGAGC 2019062 ||||| |||||||| || || | | | ||| ||| |||| || ||||| || Sbjct 8945 GACGGGAACATGCCGCACGTCATCATATCCGGCATGCCAGGCATCGGTAAGACGACCTCG 8886 Query 2019063 ATCGCGTGCCTGGCGCGCGTGCTCTTGGGCGCGGCCGCCGACGAGGCCGTGCTCGAACTC 2019122 ||| ||||| |||||| |||| | |||| ||| | | || ||||| ||||||||| Sbjct 8885 ATCCTCTGCCTCGCGCGCCAGCTCCTCGGCGACGCCTACAAGGAAGCCGTCCTCGAACTC 8826 Query 2019123 AATGCGTCAGACGAGCGCGGCGTGGACGTCGTGCGTAGAATCATCAA--GCATCACGCTT 2019180 ||||| ||||||||||||||| | |||||||| || | || || || | ||| Sbjct 8825 AATGCCTCAGACGAGCGCGGCATCGACGTCGTACGCAACCGGATAAAGGGCTTTGCGC-- 8768 Query 2019181 CGAAAAGAATCGACCTGCCGCCCGGCCGCCACAAGGTGATCATCCTCGATGAGGCCGACT 2019240 ||| | | || || ||||| || | || || || | ||||| || ||||| ||| Sbjct 8767 AGAAGAAAGTCACGCTTCCGCCTGGGAGACAGAAACTGGTTATCCTGGACGAGGCGGACA 8708 Query 2019241 GCCTTACG-TCGGCGGCCCAGCAGGCCCTCCGATCGACCATGGAAAAGTACACCAACACG 2019299 || | ||| |||| || || ||||| || || || ||||| | || | | || Sbjct 8707 GCATGACGAGCGGC-GCGCAACAGGCGCTAAGACGCACAATGGAGATTTATAGCGCGACA 8649 Query 2019300 ACGCGGTTTGCGCTGGCCTGCAACACGTCGTCGATGGTCATCGAAGCCCTCCAGAGCCGT 2019359 ||| |||||||| | || ||||| |||| | | ||||||| | |||||| ||| Sbjct 8648 ACGAGGTTTGCGTTTGCGTGCAATCAGTCGAATAAGATCATCGAGCCGCTCCAGTCACGT 8589 Query 2019360 TGCGCCATCTTGCGCTTTGCGCGCCTCACCGACGCCCAG 2019398 |||||||| ||| | | || || || ||||| || ||| Sbjct 8588 TGCGCCATTTTGAGATACGCCCGTCTTACCGATGCGCAG 8550 >seq46 Length=404262 Score = 134 bits (148), Expect = 2e-25 Identities = 156/210 (74%), Gaps = 3/210 (1%) Strand=Plus/Minus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 |||||||| ||||| ||||| | ||||| || |||||||||| ||||||||| Sbjct 337390 GCCTCGGGCACTTGCACCTCTCCGCTAAAGCGCTCGACCAGGTTCTCGTTGACGATGCCG 337331 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGA-- 796267 ||| ||||||||| |||||||||||||| ||| ||| |||||||||||| | | Sbjct 337330 TCGGAGGCGGCGAAGAAGGCGAGGACGTGGGAGATGAAGAAGCGCTCGTCGTCGTTCAAT 337271 Query 796268 -GCGAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAG 796326 || | ||||| | ||| | ||| |||| ||| |||||||||||||| ||| Sbjct 337270 CGCTTGTTCCAGTCGTGGAGGTCTTTGGAGAGATCGATCTCTTCGGCGGTCCAAAAAGAG 337211 Query 796327 GCCTCGGCCTTTTTGTACATCTCCCATATC 796356 || |||||||| |||||||| | ||| ||| Sbjct 337210 GCTTCGGCCTTCTTGTACATTTGCCAGATC 337181 Score = 122 bits (134), Expect = 1e-21 Identities = 179/251 (71%), Gaps = 2/251 (1%) Strand=Plus/Minus Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950 |||| || ||||| || || || || | | |||||| ||||| ||||| || | | Sbjct 338095 TGACACCGGCCTTCTGGTAATCACCGACCCTCTTCTCGAAGAAGTTTGTCTTACCGGCCA 338036 Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010 ||||||| |||||| | ||| ||||||| | |||| ||| | | |||| Sbjct 338035 GCGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTGGCGTTGTAGAACTTTTGGTTGCCGA 337976 Query 794011 GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCA 794070 | | | |||||||||||||||||||| || ||||||||||||||||| || ||||| Sbjct 337975 GAGCCAAGAGCAGGCGGTCGGCGACGAACTCGATGTACTGGCACATGAGCTTGGAGTTCA 337916 Query 794071 TGCCGATGAGCGC-CACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCC 794129 |||||| || || ||| || || | || ||| ||||||| |||||| ||| || Sbjct 337915 TGCCGAGAAGAGCACAC-GGTAGAGCTTCTGTGAGGAACTCTTGCTCGATGGTGACAGCT 337857 Query 794130 TCGATGATGAT 794140 ||| ||||||| Sbjct 337856 TCGGTGATGAT 337846 Score = 100 bits (110), Expect = 5e-15 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 || ||||| ||| || | ||||||| ||| ||||||||||||||||||||||||| Sbjct 337772 CCCTCGTCACGAGATATGAGTTCGTTGGAGAAGGTGAGGCCGGGCATGAGGCCGCGCTTC 337713 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 || | ||| ||||||| ||| || ||||| |||||||| || |||||||| ||| Sbjct 337712 TTCAACCAGAAGATGGACGCGAAGGAACCGGAGAAGAAGATGCCTTCTACGGCGGCGAAG 337653 Query 794461 CCGACGAGCCGCTCGGCAAAAGT 794483 | ||||| || | ||||| || Sbjct 337652 GCAACGAGGCGGTTCGCAAAGGT 337630 >seq113 Length=352843 Score = 131 bits (144), Expect = 3e-24 Identities = 98/115 (85%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706 || ||||||||||||||||||||| | |||||||| |||| |||||||| || |||||| Sbjct 76280 GCTGCCAACTACCTCGACATCAAGGCTCTCCTCGACGTGGGCTGCAAGACGGTCGCCAAC 76221 Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCAAGTACG 2035761 | ||||||||||||||||| || || ||||||||||| || |||||| || ||| Sbjct 76220 ATGATCAAGGGCAAGTCGCCGGATGAGATCCGCAAGACATTCAACATCCAGAACG 76166 >seq634 Length=211807 Score = 120 bits (132), Expect = 5e-21 Identities = 185/264 (70%), Gaps = 0/264 (0%) Strand=Plus/Plus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 |||||||||||| || || |||| |||| |||| || ||||| || | ||||||||||| Sbjct 37604 CTGGTCGACATAACGAGCGGTGTTGTTATAGACACGAAGCATAGGGATGAGGCCGTTGGA 37663 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 | ||||| || || | | ||| | ||| | ||| || | || | | || Sbjct 37664 CGTTCCGTTCGTTCCACCGATGTATGAGCCGGTGGCACGGATGCGATGAACATTGAGACC 37723 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 || ||||| || | ||||||||| | |||||| | |||||||| ||||||||||| || Sbjct 37724 AATACCGCCAGCGGTCTTGGAGATCATAGCGCACGTCTTCAGCGTGTCGTAGATGCCTTC 37783 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779 ||| ||| |||| || || | || ||||| || || | || ||| | || || Sbjct 37784 GATGCTGTCATCCTTGATATCGATGAGGAAGCAGGAGGACATCTGTGGGTTGGGTGTTCC 37843 Query 2073780 GGCATTGAAGAGCGTGGGCGTCGC 2073803 ||| ||||| ||||| || | ||| Sbjct 37844 GGCGTTGAAAAGCGTTGGAGACGC 37867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916165448959079