Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Clohesyomyces_20aquaticus_20[genbank_20GCA_5F002105025.1_202017-04-
20] 761 sequences; 49,677,730 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq46 208 1e-47
seq634 116 5e-20
>seq46
Length=404262
Score = 208 bits (230), Expect = 1e-47
Identities = 252/337 (75%), Gaps = 11/337 (3%)
Strand=Plus/Plus
Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834
||| ||| |||||||| || |||||||| ||||| |||||||||||||| ||| |||| |
Sbjct 337181 GATCTGGCAAATGTAC-AAGAAGGCCGAAGCCTCTTTTTGGACCGCCGAAGAGATCGATC 337239
Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGTCGC---TGAGCGACGACGAGCGCCATTTCATCA 1455891
|| | ||| | ||||| || ||| ||||||||||||| ||||||
Sbjct 337240 TCTCCAAAGACCTCCACGACTGGAACAAGCGATTGAACGACGACGAGCGCTTCTTCATCT 337299
Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951
|||||||||||||| || ||||||| ||| |||||||| ||||||||||| ||
Sbjct 337300 CCCACGTCCTCGCCTTCTT-CGCCGCCTCCGACGGCATCGTCAACGAGAACCTGGTCGAG 337358
Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011
||||||| |||||| ||| |||| ||||| || | || ||||| |||||||||
Sbjct 337359 CGCTTTAGCGGAGAGGTGCAAGTGCCCGAGGCGCGATGCTTCTACGGCTTCCAGATCATG 337418
Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCG 1456071
|| || ||||||||||| ||||| ||||||||| ||||||| |||||| ||| || ||
Sbjct 337419 ATGGAGAACATCCACTCGGAAACATACTCGCTCTTGATCGATACCTACATCAGCGAGCC- 337477
Query 1456072 GTCGAGAA--GGACC-ACCTCTTTCGCGCCATCGACA 1456105
| || | | ||| ||||||| |||||| ||||
Sbjct 337478 --CAAGCAGCGCACCTACCTCTTCAACGCCATTGACA 337512
Score = 118 bits (130), Expect = 2e-20
Identities = 181/253 (72%), Gaps = 4/253 (2%)
Strand=Plus/Plus
Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCG 1456582
|||||| ||| || ||| |||||| ||||||| ||| || | || ||| ||
Sbjct 337846 ATCATCACCGAAGCTGTCACCATCGAGCAAGAGTTCCTCACAGAAGCTCTACCGTGTGCT 337905
Query 1456583 CTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCC 1456642
|| ||||||||||| ||| |||||||||||||||||| || || |||||||||||||
Sbjct 337906 CTTCTCGGCATGAACTCCAA-GCTCATGTGCCAGTACATCGAGTTC-GTCGCCGACCGCC 337963
Query 1456643 TGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATG 1456702
||||| ||| |||||| | | ||| |||| | ||||||| ||| | |||
Sbjct 337964 TGCTCTTGGCTCTCGGCAAC-CAAAAGTTCTACAACGCCACCAACCCCTTCGACTTCATG 338022
Query 1456703 GAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGT-GGCGAGTACGCC 1456761
||| |||||||| | || ||||| ||||| |||||| | || || || |||
Sbjct 338023 GAGAACATCTCGCTGGCCGGTAAGACAAACTTCTTCGAGAAGAGGGTCGGTGATTACCAG 338082
Query 1456762 AAGGCCGGCGTCA 1456774
|||||||| ||||
Sbjct 338083 AAGGCCGGTGTCA 338095
Score = 95.1 bits (104), Expect = 2e-13
Identities = 139/189 (74%), Gaps = 12/189 (6%)
Strand=Plus/Plus
Query 1456126 AAGGCCGACTGGGCGATGAAGTGGATCA---ACAAGGAGGGCCTCGACACTTTGCCGAGC 1456182
|||||||||||||| | ||||||| |||| | |||||| |||||| | |
Sbjct 337588 AAGGCCGACTGGGCTCTCCGGTGGATCTCAGACAAAAA----CTCGAC-CTTTGCGAACC 337642
Query 1456183 GGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCG-CCATC 1456240
| ||||| | ||| ||||| || || |||||||| ||||| || ||| ||| |||||
Sbjct 337643 GCCTCGTTGCCTTCGCCGCCGTAGAAGGCATCTTCTTCTCCGGTTCCTTC-GCGTCCATC 337701
Query 1456241 TTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAG 1456300
|| ||| | ||||||||||||||||||||||| | || ||| ||||||| | ||
Sbjct 337702 TTCTGGTTGAAGAAGCGCGGCCTCATGCCCGG-CCTCACCTTCTCCAACGAACTCATATC 337760
Query 1456301 TCGCGACGA 1456309
||| |||||
Sbjct 337761 TCGTGACGA 337769
>seq634
Length=211807
Score = 116 bits (128), Expect = 5e-20
Identities = 184/264 (70%), Gaps = 0/264 (0%)
Strand=Plus/Minus
Query 259919 GCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTG 259978
||| | || ||||| || || ||||| || || ||| |||| || || ||||| ||
Sbjct 37867 GCGTCTCCAACGCTTTTCAACGCCGGAACACCCAACCCACAGATGTCCTCCTGCTTCCTC 37808
Query 259979 TTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTC 260038
| || || |||| || ||||| |||||||| |||||||| ||| |||||| |
Sbjct 37807 ATCGATATCAAGGATGACAGCATCGAAGGCATCTACGACACGCTGAAGACGTGCGCTATG 37748
Query 260039 ATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCC 260098
||||||||| | || ||||| || ||| | | || | || ||| | ||| |
Sbjct 37747 ATCTCCAAGACCGCTGGCGGTATTGGTCTCAATGTTCATCGCATCCGTGCCACCGGCTCA 37688
Query 260099 TACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAAC 260158
||| | | || || ||||| |||||||||||| | || |||||||| || | ||||
Sbjct 37687 TACATCGGTGGAACGAACGGAACGTCCAACGGCCTCATCCCTATGCTTCGTGTCTATAAC 37628
Query 260159 GACACGGCGCGCTACGTCGACCAG 260182
|||| || || || |||||||||
Sbjct 37627 AACACCGCTCGTTATGTCGACCAG 37604
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7177737800151282
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |