Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clohesyomyces_20aquaticus_20[genbank_20GCA_5F002105025.1_202017-04- 20] 761 sequences; 49,677,730 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq46 208 1e-47 seq634 116 5e-20 >seq46 Length=404262 Score = 208 bits (230), Expect = 1e-47 Identities = 252/337 (75%), Gaps = 11/337 (3%) Strand=Plus/Plus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| |||||||| || |||||||| ||||| |||||||||||||| ||| |||| | Sbjct 337181 GATCTGGCAAATGTAC-AAGAAGGCCGAAGCCTCTTTTTGGACCGCCGAAGAGATCGATC 337239 Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGTCGC---TGAGCGACGACGAGCGCCATTTCATCA 1455891 || | ||| | ||||| || ||| ||||||||||||| |||||| Sbjct 337240 TCTCCAAAGACCTCCACGACTGGAACAAGCGATTGAACGACGACGAGCGCTTCTTCATCT 337299 Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951 |||||||||||||| || ||||||| ||| |||||||| ||||||||||| || Sbjct 337300 CCCACGTCCTCGCCTTCTT-CGCCGCCTCCGACGGCATCGTCAACGAGAACCTGGTCGAG 337358 Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011 ||||||| |||||| ||| |||| ||||| || | || ||||| ||||||||| Sbjct 337359 CGCTTTAGCGGAGAGGTGCAAGTGCCCGAGGCGCGATGCTTCTACGGCTTCCAGATCATG 337418 Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCG 1456071 || || ||||||||||| ||||| ||||||||| ||||||| |||||| ||| || || Sbjct 337419 ATGGAGAACATCCACTCGGAAACATACTCGCTCTTGATCGATACCTACATCAGCGAGCC- 337477 Query 1456072 GTCGAGAA--GGACC-ACCTCTTTCGCGCCATCGACA 1456105 | || | | ||| ||||||| |||||| |||| Sbjct 337478 --CAAGCAGCGCACCTACCTCTTCAACGCCATTGACA 337512 Score = 118 bits (130), Expect = 2e-20 Identities = 181/253 (72%), Gaps = 4/253 (2%) Strand=Plus/Plus Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCG 1456582 |||||| ||| || ||| |||||| ||||||| ||| || | || ||| || Sbjct 337846 ATCATCACCGAAGCTGTCACCATCGAGCAAGAGTTCCTCACAGAAGCTCTACCGTGTGCT 337905 Query 1456583 CTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCC 1456642 || ||||||||||| ||| |||||||||||||||||| || || ||||||||||||| Sbjct 337906 CTTCTCGGCATGAACTCCAA-GCTCATGTGCCAGTACATCGAGTTC-GTCGCCGACCGCC 337963 Query 1456643 TGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATG 1456702 ||||| ||| |||||| | | ||| |||| | ||||||| ||| | ||| Sbjct 337964 TGCTCTTGGCTCTCGGCAAC-CAAAAGTTCTACAACGCCACCAACCCCTTCGACTTCATG 338022 Query 1456703 GAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGT-GGCGAGTACGCC 1456761 ||| |||||||| | || ||||| ||||| |||||| | || || || ||| Sbjct 338023 GAGAACATCTCGCTGGCCGGTAAGACAAACTTCTTCGAGAAGAGGGTCGGTGATTACCAG 338082 Query 1456762 AAGGCCGGCGTCA 1456774 |||||||| |||| Sbjct 338083 AAGGCCGGTGTCA 338095 Score = 95.1 bits (104), Expect = 2e-13 Identities = 139/189 (74%), Gaps = 12/189 (6%) Strand=Plus/Plus Query 1456126 AAGGCCGACTGGGCGATGAAGTGGATCA---ACAAGGAGGGCCTCGACACTTTGCCGAGC 1456182 |||||||||||||| | ||||||| |||| | |||||| |||||| | | Sbjct 337588 AAGGCCGACTGGGCTCTCCGGTGGATCTCAGACAAAAA----CTCGAC-CTTTGCGAACC 337642 Query 1456183 GGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCG-CCATC 1456240 | ||||| | ||| ||||| || || |||||||| ||||| || ||| ||| ||||| Sbjct 337643 GCCTCGTTGCCTTCGCCGCCGTAGAAGGCATCTTCTTCTCCGGTTCCTTC-GCGTCCATC 337701 Query 1456241 TTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAG 1456300 || ||| | ||||||||||||||||||||||| | || ||| ||||||| | || Sbjct 337702 TTCTGGTTGAAGAAGCGCGGCCTCATGCCCGG-CCTCACCTTCTCCAACGAACTCATATC 337760 Query 1456301 TCGCGACGA 1456309 ||| ||||| Sbjct 337761 TCGTGACGA 337769 >seq634 Length=211807 Score = 116 bits (128), Expect = 5e-20 Identities = 184/264 (70%), Gaps = 0/264 (0%) Strand=Plus/Minus Query 259919 GCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTG 259978 ||| | || ||||| || || ||||| || || ||| |||| || || ||||| || Sbjct 37867 GCGTCTCCAACGCTTTTCAACGCCGGAACACCCAACCCACAGATGTCCTCCTGCTTCCTC 37808 Query 259979 TTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTC 260038 | || || |||| || ||||| |||||||| |||||||| ||| |||||| | Sbjct 37807 ATCGATATCAAGGATGACAGCATCGAAGGCATCTACGACACGCTGAAGACGTGCGCTATG 37748 Query 260039 ATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCC 260098 ||||||||| | || ||||| || ||| | | || | || ||| | ||| | Sbjct 37747 ATCTCCAAGACCGCTGGCGGTATTGGTCTCAATGTTCATCGCATCCGTGCCACCGGCTCA 37688 Query 260099 TACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAAC 260158 ||| | | || || ||||| |||||||||||| | || |||||||| || | |||| Sbjct 37687 TACATCGGTGGAACGAACGGAACGTCCAACGGCCTCATCCCTATGCTTCGTGTCTATAAC 37628 Query 260159 GACACGGCGCGCTACGTCGACCAG 260182 |||| || || || ||||||||| Sbjct 37627 AACACCGCTCGTTATGTCGACCAG 37604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177737800151282