Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clohesyomyces_20aquaticus_20[genbank_20GCA_5F002105025.1_202017-04- 20] 761 sequences; 49,677,730 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq634 264 1e-65 seq46 89.7 6e-13 >seq634 Length=211807 Score = 264 bits (292), Expect = 1e-65 Identities = 913/1396 (65%), Gaps = 35/1396 (3%) Strand=Plus/Plus Query 110707 GTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGA-TTTGTGCGGTGG 110765 ||||||||| | || |||||||| ||||||||||| | | |||||| |||| | |||| Sbjct 36590 GTAGATGTTGGAGGTATATGGTTCGAAGCATTCATTGT-AGCCAAGAATTTGGGATGTGG 36648 Query 110766 AGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTT 110825 |||| || ||||| || || | | || ||| |||| ||| | || ||| | Sbjct 36649 AGGCAGTAGGCATGGGGGCAACAAGCAGCGAGTTGCGAACACCATGCTGTGCGATCTTTG 36708 Query 110826 CCTTGAGAACATCCCAGTCGTAGTTGA-GCTTGGTTTCACCTTCCCACATGTCAAACTGA 110884 |||||||| |||||||||| || | | | || | | |||| |||| ||| | ||| Sbjct 36709 CCTTGAGAGCATCCCAGTCCCAGAGGTCGGTGGGCGTGATATTCC-ACATATCATATTGA 36767 Query 110885 AGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCC 110944 || | || || || | ||||| ||||| | |||||||| | ||| | | | ||| Sbjct 36768 AGTATGCCCTGCGAGACAGGAGAGCCCTCGTAAGTTTCATATGGACCAAGTTCCTTGGCC 36827 Query 110945 AATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATC 111004 | || || || || | ||||| || ||||| |||||||| | | || | | Sbjct 36828 AGATCGCAAGACGATGTGAGAGCAGCGTGGTAGATGGTCTCAAAGATCTGGGTGTTGAGC 36887 Query 111005 TCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAA-ATAAATACATCCGCGAGACC 111063 | | | ||||| || || || | | || ||| | || ||||||| ||||| Sbjct 36888 TTCCTTGCTTCGGGAGAGTCGAAGG-GCAGGCGCAGGGCGAGGAAGGCATCCGCAAGACC 36946 Query 111064 TTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA---AC 111120 || || || | ||| | ||| ||||||| | || || | ||| || ||| || Sbjct 36947 CTGGACTCCAAGACCGACAGGCCTGTGTCTGAAGTTG--CTGTTGCG-AGCTTCAGGAAC 37003 Query 111121 GGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTC 111180 || || ||| || || | ||| ||||| || || | || || ||| Sbjct 37004 CGGGTAGTGATTGACCTCGATAATCTTGTTCAGATTACGAGTGACGACCTGGACGACTTC 37063 Query 111181 ATGAAGTTTTTCATAATCAAAAGTGCGA-GTCTCTTCATTGACATACTTTGGAAGGGCGA 111239 || || || | ||||| | || | || | | | |||||| || || || | Sbjct 37064 GTGGAGCTTCTGGAAATCATACTCGCCACGTTGCATG-TCCACATACGCAGGGAGTGCAA 37122 Query 111240 TTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTAC 111299 || ||||| ||||| || || |||||| | |||||||| | || || || | Sbjct 37123 GCGAGGCCAAGTTGCAGACGGCAACCTCATCGGGTGCGGTGTACTCAATGATCTCGGTGC 37182 Query 111300 ATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCAT 111359 | | ||| || || ||| || || | ||||| ||||| || || |||||| |||| Sbjct 37183 AGAGGTTAGAGCTGCGAATAGTTCCGAGGTTCTTCTGGTTGCTTTTGCGGTTGCATGCAT 37242 Query 111360 CCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA-A 111418 ||||||||||||| || || | || ||||| ||||| | | ||| || || | ||| | Sbjct 37243 CCTTGTAGAGCATATACGGGTTTCCAGTCTCGGTCTGGGCCTCGAGGATGGCGTACCAGA 37302 Query 111419 ACATCGGCGGCTGGTACAATGGCGTTGGCC-CGTCCCTCCGCCTCGTACTTTGTG-TAGA 111476 | || | ||| | ||| | | | | || |||||||| ||||| ||| ||||| || | Sbjct 37303 GCTTCTG-GGCGCGCACAGTCTC-TCGTCCGCGTCCCTCGGCCTCATAC-TTGTGATACA 37359 Query 111477 GGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAA 111536 | | || ||||| || || |||||| | || || || | || || ||||||| Sbjct 37360 GCTCCTCGAACTCGTCGCCATAGACGTCGGCCAACCCAGGGGCTTCGTTCGGGCAGAAAA 37419 Query 111537 GAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATG 111596 ||| ||| | ||| |||| |||||||||||||| ||||| ||||||||||| | Sbjct 37420 GAGTCCACTCTCCATTATCCTGGACCCGCTTCATGAAGAGGTCAGGAATCCACAGAGCGT 37479 Query 111597 AAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACT 111656 | || | ||| | || |||||| | || ||||| || | |||||||| Sbjct 37480 AGAACAAATCACGGGCGCGGATCTCTTCCTTGCCATGGTTCTTGCGAAGATCAAGGAAGC 37539 Query 111657 CCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC---- 111712 | | || ||| |||||||||||||| || |||| |||| || || | | ||| Sbjct 37540 CAAAGACATCGGCGTGCCATGGCTCGAGGTAGATGGCGAAAGCACC---TGGGCGCTTAT 37596 Query 111713 --CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATAC 111770 ||| | || | ||||| || || ||| |||| | || |||||||| || || | | Sbjct 37597 TGCCACCCTGGTCGACATAACGAGCGGTGTTGTTATAGACACGAAGCATAGGGATGAGGC 37656 Query 111771 CATCTGATTGACCATTTG-TCCCCCGA-ATACGAGATTTATTGGCTCTCACATCATGGAT 111828 | | || || || | ||| |||| || ||| |||| | | ||| | Sbjct 37657 CGTTGGACGTTCCGTTCGTTCCACCGATGTATGAG--CCGGTGGCACGGATGCGATGAAC 37714 Query 111829 GTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATA 111888 | | |||||||| ||||| ||| ||||| || ||| | | || || | || Sbjct 37715 ATTGAGACCAATACCGCCAGCGGTCTTGGAGATCATAGCGCACGTCTTCAGCGTGTCGTA 37774 Query 111889 GATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCT 111948 ||| || | ||| ||| |||||| | |||| |||||||| ||||||||| || | Sbjct 37775 GATGCCTTCGATGCTGTCATCCTTGATATCGATGAGGAAGCAGGAGGACATCTGTGGGTT 37834 Query 111949 TGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGACATCT 112007 ||||| || || ||||| || ||||| | ||||| |||| || | | |||||| | Sbjct 37835 GGGTGTTCCGGCGTTGAAAAGCGTTGGAGACGCGTGTGTGAA-GTATTTGTTGGACATGT 37893 Query 112008 TGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCA 112067 || ||||||||| | | | || |||||||| ||||||||||| | || || |||| Sbjct 37894 AGTTGTATGTCTCGATGGCCTTCTCGATGTCTTCGCCGTGGATGCCAACGGCTACACGCA 37953 Query 112068 TGAACATGTACTGTGG 112083 ||| ||||| ||||| Sbjct 37954 TGAGCATGTGTTGTGG 37969 >seq46 Length=404262 Score = 89.7 bits (98), Expect = 6e-13 Identities = 301/460 (65%), Gaps = 24/460 (5%) Strand=Plus/Minus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 || || ||||||| |||||| |||||||| ||||| || | || ||||| ||||| Sbjct 338078 TAATCACCGACCCTCTTCTCGAAGAAGTTTGTCTTACCGGCCAGCGAGATGTTCTCCATG 338019 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAA-----TGGGTGGCACC--CCAACTTGTTTGAG 122483 ||||| || || || | ||||| | | ||| || | |||| ||| Sbjct 338018 AAGTCGAAGGGGTTGGTGGCGTTGTAGAACTTTTGGTTGCCGAGAGCCAA-------GAG 337966 Query 122484 GAGACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAG 122543 || || || | || |||| ||||||| | |||| || |||||||| |||| || Sbjct 337965 CAGGCGGTCGGCGACGAACTCGATGTACTGGCACATGAGCTTGGAGTTCATGCCGAGAAG 337906 Query 122544 GTTACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGAT 122603 ||| || || || || || |||| ||| ||| || || || || | | ||| Sbjct 337905 AGCACACGGTAGAGCTTCTGTGAGGAACTCTTGCTCGATGGTGACAGCTTCGGTGATGAT 337846 Query 122604 GGCGTGGA--TAGTTTCGGTAGTGG-GTCTATTACGCAAAGTCTTGAAGAGCTC-CACGG 122659 ||| | || | ||| | | | || | || | | || |||||| |||| Sbjct 337845 GGCCTCGACTTCCTTTTGCGACGGACGTGTGTTGAGGAGAGA---GAAGAGTAGGCACG- 337790 Query 122660 CAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTG 122719 | || || ||| | ||||| || || || || ||||| || |||||| || || | Sbjct 337789 CGAAGTCGGTGTGCATGCCCTCGTCACGAGATATGAGTTCGTTGGAGAAGGTGAGGCCGG 337730 Query 122720 GCATGAGACCCCGCTTCTTCAACCAATAAATAG-CGCAGAATGACCCGGAGAAGAAGATA 122778 ||||||| || |||||||||||||| | || | ||| ||| || |||||||||||||| Sbjct 337729 GCATGAGGCCGCGCTTCTTCAACCAGAAGATGGACGC-GAAGGAACCGGAGAAGAAGATG 337671 Query 122779 CCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGG 122818 || || || || || |||| ||||| | || |||| Sbjct 337670 CCTTCTACGGCGGCGAAGGCAACGAGGCGGTTCGCAAAGG 337631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628026025845600