Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clohesyomyces_20aquaticus_20[genbank_20GCA_5F002105025.1_202017-04- 20] 761 sequences; 49,677,730 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq634 293 3e-74 seq390 118 1e-21 seq46 105 8e-18 >seq634 Length=211807 Score = 293 bits (324), Expect = 3e-74 Identities = 1136/1752 (65%), Gaps = 41/1752 (2%) Strand=Plus/Minus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 ||||| ||||| ||||||| || ||| | || || || || |||||||| || | | Sbjct 37969 CCACAACACATGCTCATGCGTGTAGCCGTTGGCATCCACGGCGAAGACATCGAGAAGGCC 37910 Query 104282 TTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTT 104340 | ||||||||| || | |||||| | | || |||| ||||| | ||||| || || Sbjct 37909 ATCGAGACATACAACTACATGTCCAACAAATAC-TTCACACACGCGTCTCCAACGCTTTT 37851 Query 104341 CAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 104400 ||| || || ||||| | || || |||||| |||||||| |||| | |||||| || Sbjct 37850 CAACGCCGGAACACCCAACCCACAGATGTCCTCCTGCTTCCTCATCGATATCAAGGATGA 37791 Query 104401 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 104460 | ||| | || ||||| | || || | | ||| || ||||| ||| ||||| Sbjct 37790 CAGCATCGAAGGCATCTACGACACGCTGAAGACGTGCGCTATGATCTCCAAGACCGCTGG 37731 Query 104461 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTAT-TCGGGGGA-CA 104518 |||||||| | | | ||| | | |||| ||| || |||| ||| | Sbjct 37730 CGGTATTGGTCTCAATGTTCATCGCATCCGTGCCACCGG--CTCATACATCGGTGGAACG 37673 Query 104519 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 104578 || || || | || | || || |||||||| || | |||| ||| || || ||| Sbjct 37672 AACGGAACGTCCAACGGCCTCATCCCTATGCTTCGTGTCTATAACAACACCGCTCGTTAT 37613 Query 104579 GTAAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGG 104632 || | || | ||| ||| | | || || |||| |||| || ||||||||| Sbjct 37612 GTCGACCAGGGTGGCAATAAGCGCCCA---GGTGCTTTCGCCATCTACCTCGAGCCATGG 37556 Query 104633 CACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGG 104692 ||||| ||| || | | |||||||| | || ||||| || | || ||| || Sbjct 37555 CACGCCGATGTCTTTGGCTTCCTTGATCTTCGCAAGAACCATGGCAAGGAAGAGATCCGC 37496 Query 104693 TGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAG 104752 ||| ||| | |||| |||||| |||||||| || |||||||||||| | || |||| Sbjct 37495 GCCCGTGATTTGTTCTACGCTCTGTGGATTCCTGACCTCTTCATGAAGCGGGTCCAGGAT 37436 Query 104753 AGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGT 104812 | ||| | ||| |||| || || || || | || ||||| | |||| | | || Sbjct 37435 AATGGAGAGTGGACTCTTTTCTGCCCGAACGAAGCCCCTGGGTTGGCCGACGTCTATGGC 37376 Query 104813 GAGGAGTTTGAAGCCCTTTA-CACAAAGTACGAGGAAGAAGGTCGGGCGAC-TGCGACGG 104870 || ||||| || | || || ||| ||||| |||| || || || | ||| | ||| | Sbjct 37375 GACGAGTTCGAGGAGCTGTATCAC-AAGTATGAGGCCGAGGGACGCG-GACGAGAGACTG 37318 Query 104871 TGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCA 104929 ||| || | || | | ||| | || || ||| || | || ||||||||||| | || Sbjct 37317 TGCGCGC-CCAGAAGCTCTGGTACGCCATCCTCGAGGCCCAGACCGAGACTGGAAACCCG 37259 Query 104930 TACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATC 104989 || ||||| ||||| || || || |||| || || || || ||||| | || || Sbjct 37258 TATATGCTCTACAAGGATGCATGCAACCGCAAAAGCAACCAGAAGAACCTCGGAACTATT 37199 Query 104990 AAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTG 105049 || || || ||||| || || ||| | || | || | |||||| || || Sbjct 37198 CGCAGCTCTAACCTCTGCACCGAGATCATTGAGTACACCGCACCCGATGAGGTTGCCGTC 37139 Query 105050 TGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACA-TTTGA 105108 || ||| | || || | || ||||| ||||||||| | | || | | | ||| Sbjct 37138 TGCAACTTGGCCTCGCTTGCACTCCCTGCGTATGTGGA-CATGCAACGTGGCGAGTATGA 37080 Query 105109 TTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGA 105168 || | || ||||||||||| | ||||| || || |||| |||| || Sbjct 37079 TTTCCAGAAGCTCCACGAAGTCGTCCAGGTCGTCACTCGTAATCTGAACAAGATTATCGA 37020 Query 105169 TAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGG 105228 ||| ||||| ||| ||||| || || | |||||| | || | || Sbjct 37019 GGTCAATCACTACCCGGTTCCTGAAGCTCGCAACAGCAACTTCAGACACAGGCCTGTCGG 36960 Query 105229 TCTCGGTGTTCAGGGTCTCGCGGATGTATTCAT-TCTTTGTCGCCACGCATTTGATTCCG 105287 ||| || || |||||||| ||||||| ||| | | || |||| | || || || Sbjct 36959 TCTTGGAGTCCAGGGTCTTGCGGATGCCTTCCTCGCCCTG-CGCCTGCCCTTCGACTCTC 36901 Query 105288 ACGAAGCGAAGGAA-ATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAG 105346 |||||| |||||| |||| | | || ||||||||||| || ||||| ||||| Sbjct 36900 CCGAAGC-AAGGAAGCTCAACACCCAGATCTTTGAGACCATCTACCACGCTGCTCTCACA 36842 Query 105347 GCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCT 105406 || || || |||| ||| ||||||||||||||| | ||||| ||||| | Sbjct 36841 TCGTCTTGCGATCTGGCCAAGGAACTTGGTCCATATGAAACTTACGAGGGCTCTCCTGTC 36782 Query 105407 TCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGA-GACCAAGCTTCACTACGACTG 105465 || || || | ||||||| |||||||| |||| | | | ||| | || ||||| Sbjct 36781 TCGCAGGGCATACTTCAATATGATATGT-GGAATATCACGCCCACCGACCTCTGGGACTG 36723 Query 105466 GGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCC 105525 ||| |||||||||| | ||| || | ||| |||| ||| || || | || || Sbjct 36722 GGATGCTCTCAAGGCAAAGATCGCACAGCATGGTGTTCGCAACTCGCTGCTTGTTGCCCC 36663 Query 105526 AATGCCAACAGCCTCCACCGCACAAA-TCTTGGGTAATAATGAATGCTTTGAACCCTACA 105584 ||||| || |||||||| | |||| |||||| | | ||||||||||| ||||| || | Sbjct 36662 CATGCCTACTGCCTCCACATCCCAAATTCTTGGCT-ACAATGAATGCTTCGAACCATATA 36604 Query 105585 CGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCATC 105644 | | |||||||| | | | || || ||||| | | |||||| | Sbjct 36603 CCTCCAACATCTACTCCCGCCGTGTTTTGGCCGGCGAGTTCCAGGTCGTCAACCCCTGGC 36544 Query 105645 TCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCATGGTGA 105704 || || | || | || || || || ||||| | | |||||| | | ||| | Sbjct 36543 TCCTGAAGGATTTGGTTGACATGGGCCTGTGGTCTGACAACATGAAGAACCGCATCATCG 36484 Query 105705 AAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAAATGAAATTAAGAAGTTGTACC 105764 | ||||||||||| || | ||| | ||||| ||||||| ||| | | ||| Sbjct 36483 CCGATGGTGGTTCCATCCAGAGGATTCCTAACATTCCCGATGAAATCAAGGCGCTATACA 36424 Query 105765 GCACAGTTTGGGAAAT---CAAGATGAAGGATGTCATTGACATGGCCGCAGATCGTGGTC 105821 || || |||||||| | || | | | ||||| | |||||||| || ||||| Sbjct 36423 AGACCGTGTGGGAAATCTCCCAG-CGTACCA--TCATTCAGATGGCCGCTGACCGTGGCG 36367 Query 105822 GCTTCATTGATCAAAGTCAAAGT--ATGAATCTCTTCATGGAAAGTCCAACGATGTCCAA 105879 |||||| |||| |||| ||| | || | |||| | || || ||| ||| Sbjct 36366 CCTTCATCGATC--AGTCCCAGTCGCTCAACATTCACATGAAGGAGCCTACCATGGGCAA 36309 Query 105880 GCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGTATTACCT 105939 | | | || |||||| | | | |||||| |||||||| || || | || ||||| Sbjct 36308 GATTACATCGATGCACTTCGCCGGATGGAAGCTTGGTCTCAAGACCGGCCTCTACTACCT 36249 Query 105940 CCGATCTAAGGC 105951 |||| | | ||| Sbjct 36248 CCGAACAATGGC 36237 >seq390 Length=251960 Score = 118 bits (130), Expect = 1e-21 Identities = 250/367 (68%), Gaps = 6/367 (2%) Strand=Plus/Plus Query 169126 CTTGAGAAGACTTGGCCAGAAGTAGTGAATCATATTGAGAATGAGACCCTTGATGTGGGA 169185 |||||| ||||| || | | | |||| | ||||| | |||||||||||| || Sbjct 45756 CTTGAGCAGACTAGGGAACTGGCATTGAAGGAAATTGATCAGGAGACCCTTGATATGACT 45815 Query 169186 ACCGTCGTTATCGGCATCCGTCATGATCATGAGACGACCATACCGAAGCTCGGAAACATC 169245 ||||||| || ||||||||||||||||||| | ||||| ||||| || || Sbjct 45816 GCCGTCGTGGTCCTGATCCGTCATGATCATGAGATGTCCATAGCGAAGGCCGCGCGTGTC 45875 Query 169246 TTGATAGTCCTTACCCTGTTGAAGACCCAAGATCTTCTTGAGATCGTTGAACTCTTGGTT 169305 ||| ||||| ||||||||||| | || ||| |||| | | || || ||||| Sbjct 45876 CGTATATTCCTTCTTGTGTTGAAGACCAAGGAACTTTTTGATGTTCTGGATTTCCTGGTT 45935 Query 169306 TGATGTGAGCTGTGTGACAGAGGCATCGCGAACATTCTTACACTTCCCACGAAGAGGGAA 169365 | | ||| || ||| ||||| || ||||| ||| ||||| || || || Sbjct 45936 CTTCGATATCTGATCGATAGATGCATCTCGGACATTGAGTAGCTTACCACGCAGGGGAAA 45995 Query 169366 GACACCGTAGTGATCACGACCAACGACGGAGAGACCCGCGACTGCGAG-AGTCTTCGCCG 169424 ||||||| | |||| || | ||||| | | || || | ||||| || | | |||| Sbjct 45996 GACACCGAAAAGATCTGGATCCACGACCGCACGGCCAGCCAAAGCGAGCAGAC-TGGCCG 46054 Query 169425 AGTCACCCTCGGTGACGATGAGCGTACATTTTCCAG--ATTGTGCCGTACCCGCCTTGTT 169482 |||| || ||||||| || || || || |||||| || | ||||| |||||||| Sbjct 46055 AGTCTCCTTCGGTGAGAATTAGAGTGCA-CTTCCAGCCATCCT-TGGTACCAGCCTTGTT 46112 Query 169483 CGCATCA 169489 ||||||| Sbjct 46113 CGCATCA 46119 >seq46 Length=404262 Score = 105 bits (116), Expect = 8e-18 Identities = 150/206 (73%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 94734 AGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTT-TGATACAAAGTCGC 94792 |||||| ||||| | || || || |||||| | |||| | | | ||||| | | Sbjct 337569 AGTTCCCTGTATCCGCCGCAAGGCCGACTGGGCTCTCCGGTGGATCTCAGACAAAAACTC 337628 Query 94793 GTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTT 94852 | ||||||| | || ||| | || || || || || || ||||||||||| |||| Sbjct 337629 GA-CCTTTGCGAACCGCCTCGTTGCCTTCGCCGCCGTAGAAGGCATCTTCTTCTCCGGTT 337687 Query 94853 CCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCC 94911 ||||| ||| | || | ||| | |||||||| || |||||||| || ||| ||||||| Sbjct 337688 CCTTC-GCGTCCATCTTCTGGTTGAAGAAGCGCGGCCTCATGCCCGGCCTCACCTTCTCC 337746 Query 94912 AACGAGCTTATCTCTCGTGACGAGGG 94937 ||||| || || |||||||||||||| Sbjct 337747 AACGAACTCATATCTCGTGACGAGGG 337772 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583255251731640