Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clohesyomyces_20aquaticus_20[genbank_20GCA_5F002105025.1_202017-04- 20] 761 sequences; 49,677,730 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq634 286 4e-72 seq390 105 7e-18 seq46 87.8 2e-12 >seq634 Length=211807 Score = 286 bits (316), Expect = 4e-72 Identities = 524/757 (69%), Gaps = 12/757 (2%) Strand=Plus/Minus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252 ||||||| || ||| | || |||||||| || ||| | | | | ||||| ||| Sbjct 37956 TCATGCGTGTAGCCGTTGGCATCCACGGCGAAGACATCGAGAAGGCCATCGAGACATACA 37897 Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312 ||| ||| | | || ||||| || ||||| | ||||| || |||||||| || || Sbjct 37896 ACTACATGTCCAACAAATACTTCACACACGCGTCTCCAACGCTTTTCAACGCCGGAACAC 37837 Query 53313 ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCA 53372 |||| |||||||| ||||||||| | | || ||||||||| ||||| |||| Sbjct 37836 CCAACCCACAGATGTCCTCCTGCTTCCTCATCGATATCAAGGATGACAGCATCGAAGGCA 37777 Query 53373 TCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCC 53432 ||||||| ||||| ||| ||| || ||||||||| | || ||||| ||| || Sbjct 37776 TCTACGACACGCTGAAGACGTGCGCTATGATCTCCAAGACCGCTGGCGGTATTGGTCTCA 37717 Query 53433 ACTGCTCGAACG--TCCGTGCGAACGGCACACCAATCAAGGGGACGAACGG--CGTCGCC 53488 | || || | || ||||||| | |||| || ||| || |||||||| |||| | Sbjct 37716 A-TGTTC-ATCGCATCCGTGCCACCGGCTCATACATCGGTGGAACGAACGGAACGTC--C 37661 Query 53489 GATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGT 53548 | || || | |||||||| || |||| |||||||| || || || ||| |||||||| Sbjct 37660 AACGGCCTCATCCCTATGCTTCGTGTCTATAACAACACCGCTCGTTATGTCGACCAGGGT 37601 Query 53549 GGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATG 53608 || |||||| || | |||||||||||||||||||| ||||||||||| | | Sbjct 37600 GGCAATAAGCGCCCAGGTGCTTTCGCCATCTACCTCGAGCCATGGCACGCCGATGTCTTT 37541 Query 53609 GAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT- 53667 | || || || || || ||| || || | |||||||| ||| |||||| |||| Sbjct 37540 GGCTTCCTTGATCTTCGCAAGAACCATGGCAAGGAAGAGATCCGCGCCCGTGATTTGTTC 37481 Query 53668 TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTA 53727 ||| |||||||||||||| |||||||||||| | ||| || | | | |||||| Sbjct 37480 TAC-GCTCTGTGGATTCCTGACCTCTTCATGAAGCGGGTCCAGGATAATGGAGAGTGGAC 37422 Query 53728 CCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGA 53787 || | ||||||||||| ||| || | | ||||| || || ||||| | || Sbjct 37421 TCTTTTCTGCCCGAACGAAGCCCCTGGGTTGGCCGACGTCTATGGCGACGAGTTCGAGGA 37362 Query 53788 GATGTATCGGACGTACGCAGTTCAGGGCCGC-TACAAGAAGAAGGTCAAGGCGCGTGAGG 53846 | |||||| | ||| | | |||| ||| || || ||| || || | || Sbjct 37361 GCTGTATCACAAGTATGAGGCCGAGGGACGCGGACGAG-AGACTGTGCGCGCCCAGAAGC 37303 Query 53847 TATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGG 53906 | ||| | || |||||| || |||| ||||| |||| ||||| ||| |||||||| Sbjct 37302 TCTGGTACGCCATCCTCGAGGCCCAGACCGAGACTGGAAACCCGTATATGCTCTACAAGG 37243 Query 53907 ATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGG 53943 || | |||| || ||||||||||||||| |||| Sbjct 37242 ATGCATGCAACCGCAAAAGCAACCAGAAGAACCTCGG 37206 Score = 93.3 bits (102), Expect = 5e-14 Identities = 138/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 55728 TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTG 55787 |||||| | | ||| ||| |||||||| || | ||| | | ||| | ||| | Sbjct 36438 TCAAGGCGCTATACAAGACCGTGTGGGAAATCTCCCAGCGTACCATCATTCAGATGGCCG 36379 Query 55788 CTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTT 55847 |||| ||||| || | |||||| ||||||||||| || ||||| |||| || | ||| Sbjct 36378 CTGACCGTGGCGCCTTCATCGATCAGTCCCAGTCGCTCAACATTCACATGAAGGAGCCTA 36319 Query 55848 CACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTA 55907 | ||| |||| | | ||||||||||| ||| |||||| || |||||||| || Sbjct 36318 CCATGGGCAAGATTACATCGATGCACTTCGCCGGATGGAAGCTTGGTCTCAAGACCGGCC 36259 Query 55908 TGTACTATCTGCGGAC 55923 | ||||| || || || Sbjct 36258 TCTACTACCTCCGAAC 36243 >seq390 Length=251960 Score = 105 bits (116), Expect = 7e-18 Identities = 302/459 (66%), Gaps = 4/459 (1%) Strand=Plus/Plus Query 151868 AGCTGAATCCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGG 151927 |||| | || ||||| || || || | ||| ||||| |||| ||| || | ||| ||| Sbjct 44888 AGCTCCAACCAGTACCAATACCTTCGGAACCATTGACGAGAACCATGGGAAGAATTGGGA 44947 Query 151928 CGTAAAACTCCGGCTCCACCT-GTTGACCGTCATCCATCACGTATTTCAAAACGGAATTG 151986 | || | ||| ||||| | || |||| || ||| | ||||||||| | | || | Sbjct 44948 CATATATCTCGGGCTCAATCTTGTTG-CCATCAGACTCGCCGTATTTCAGGAGAGCATCG 45006 Query 151987 TCAGCCGGATCGAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAG 152046 || | | ||| |||| |||| | ||| ||| || ||| | || || | || | Sbjct 45007 TCGTGTGCGTGGAAAATCCTGCGAGCAAAGGGAGACAACCGGGTGTAAATATACCTGGCG 45066 Query 152047 CTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGG 152106 ||||| ||||| | |||||| ||| || | ||||| | ||| ||||| || | Sbjct 45067 CTGGCAGCATCTTGACCACCTTGCAGACGTGAACCAAAGTTACCACTCGGCTCCAGACAG 45126 Query 152107 TTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTC 152166 |||| |||||| | || ||||| ||||| || | | || ||||| ||||||| | | Sbjct 45127 TTGATGTTGTTCGAACCAACGAAGTTCTGGGCTAGACCAACGATCGTTCCCTGCATAGAC 45186 Query 152167 GCTTCACCGTGGTGATACGCCGTC-TGCTCCGCGATGTATCCCGCCAACTGCGCCACCTT 152225 | |||||| | || | ||| ||| | | | | | ||||| | | |||| || Sbjct 45187 GTTTCACCATACGCGTAGTCGGTCGTGC-CAGATACGGAACCCGCAAGATCAACCACTTT 45245 Query 152226 CATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTT 152285 | |||| || | | ||| ||||||||||| ||| | |||||||| || | || Sbjct 45246 GACGTCCTTCCTGATGTTTCGCTTGAGACAGGTGTAGAGAACCTTGCGTTGACCGGTCTT 45305 Query 152286 CAAACCGTCCACCACGTGAGGAATCGAACGCTTGATGTC 152324 ||||| || | ||| ||| || || ||| | |||| Sbjct 45306 GAAACCATCAATGACGGAAGGGATGGATCGCATATTGTC 45344 >seq46 Length=404262 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 74783 TATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGAT 74842 ||| | ||| || || || | ||||| ||||| || || |||||||||||||| ||||| Sbjct 337758 TATGAGTTCGTTGGAGAAGGTGAGGCCGGGCATGAGGCCGCGCTTCTTCAACCAGAAGAT 337699 Query 74843 GGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTG 74902 || ||||||||| ||||||||||||||| || || ||||| || ||||| | Sbjct 337698 GGACGCGAAGGAACCGGAGAAGAAGATGCCTTCTACGGCGGCGAAGGCAACGAGGCGGTT 337639 Query 74903 CGCGAA 74908 ||| || Sbjct 337638 CGCAAA 337633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547210794607800